Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AC006058.3-201ENST00000606217 1069 ntBASIC15.15■□□□□ 0.02
CSMD3Q7Z407 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 DUSP8P3-201ENST00000399571 1760 ntBASIC15.15■□□□□ 0.02
CSMD3Q7Z407 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.15■□□□□ 0.02
CSMD3Q7Z407 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 AP001160.3-201ENST00000601484 763 ntBASIC15.15■□□□□ 0.02
CSMD3Q7Z407 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 AC211429.1-201ENST00000415277 523 ntBASIC15.14■□□□□ 0.01
CSMD3Q7Z407 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 ECEL1P3-201ENST00000427961 737 ntBASIC15.14■□□□□ 0.01
CSMD3Q7Z407 INO80E-214ENST00000620599 515 ntTSL 2 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 AP006294.2-201ENST00000641667 209 ntBASIC15.14■□□□□ 0.01
CSMD3Q7Z407 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CSMD3Q7Z407 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 AC055733.4-201ENST00000638462 1354 ntBASIC15.13■□□□□ 0.01
CSMD3Q7Z407 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 MAX-217ENST00000557277 728 ntTSL 3 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.13■□□□□ 0.01
CSMD3Q7Z407 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC010141.3-201ENST00000456659 717 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC073648.6-201ENST00000641589 218 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 MIPEPP3-201ENST00000412105 444 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 PHB2-213ENST00000546111 858 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC013268.1-206ENST00000638368 961 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC112229.1-201ENST00000639295 961 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.12■□□□□ 0.01
CSMD3Q7Z407 AC093787.1-201ENST00000450396 207 ntBASIC15.12■□□□□ 0.01
CSMD3Q7Z407 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 MIR4497-201ENST00000583208 89 ntBASIC15.11■□□□□ 0.01
CSMD3Q7Z407 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD3Q7Z407 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms