Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC008550.1-201ENST00000511500 884 ntBASIC23.17■■□□□ 1.3
CHD9Q3L8U1 AC073648.6-201ENST00000641589 218 ntBASIC23.17■■□□□ 1.3
CHD9Q3L8U1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 OXCT2P1-201ENST00000447263 1535 ntBASIC23.16■■□□□ 1.3
CHD9Q3L8U1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 ECEL1P3-201ENST00000427961 737 ntBASIC23.16■■□□□ 1.3
CHD9Q3L8U1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CHD9Q3L8U1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 AC010141.2-201ENST00000452426 721 ntBASIC23.15■■□□□ 1.3
CHD9Q3L8U1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 DUSP8P3-201ENST00000399571 1760 ntBASIC23.15■■□□□ 1.3
CHD9Q3L8U1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.15■■□□□ 1.3
CHD9Q3L8U1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CHD9Q3L8U1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CHD9Q3L8U1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.14■■□□□ 1.29
CHD9Q3L8U1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.14■■□□□ 1.29
CHD9Q3L8U1 AP003733.4-201ENST00000623785 1697 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 BX276092.2-201ENST00000417668 665 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 AC138932.3-201ENST00000567634 1902 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 AC004812.2-201ENST00000611079 2094 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 AC211429.1-201ENST00000415277 523 ntBASIC23.13■■□□□ 1.29
CHD9Q3L8U1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CHD9Q3L8U1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 OR10C1-204ENST00000622521 1039 ntBASIC23.12■■□□□ 1.29
CHD9Q3L8U1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CHD9Q3L8U1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.11■■□□□ 1.29
CHD9Q3L8U1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 UNC93B5-201ENST00000530315 699 ntBASIC23.1■■□□□ 1.29
CHD9Q3L8U1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.1■■□□□ 1.29
CHD9Q3L8U1 AC142381.4-202ENST00000563973 229 ntBASIC23.1■■□□□ 1.29
CHD9Q3L8U1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC23.09■■□□□ 1.29
CHD9Q3L8U1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.09■■□□□ 1.29
CHD9Q3L8U1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms