Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DUX4L8-201ENST00000629013 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L3-201ENST00000630187 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L7-201ENST00000630678 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 DUX4L5-201ENST00000630834 1275 ntBASIC19.95■□□□□ 0.78
RNF4P78317 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.95■□□□□ 0.78
RNF4P78317 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.95■□□□□ 0.78
RNF4P78317 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF4P78317 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
RNF4P78317 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.95■□□□□ 0.78
RNF4P78317 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
RNF4P78317 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF4P78317 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.94■□□□□ 0.78
RNF4P78317 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.94■□□□□ 0.78
RNF4P78317 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.94■□□□□ 0.78
RNF4P78317 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.94■□□□□ 0.78
RNF4P78317 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF4P78317 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF4P78317 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF4P78317 AC005224.4-201ENST00000583262 1652 ntBASIC19.94■□□□□ 0.78
RNF4P78317 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
RNF4P78317 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
RNF4P78317 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.93■□□□□ 0.78
RNF4P78317 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.93■□□□□ 0.78
RNF4P78317 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 AC233723.2-201ENST00000623798 2106 ntBASIC19.93■□□□□ 0.78
RNF4P78317 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF4P78317 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
RNF4P78317 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.92■□□□□ 0.78
RNF4P78317 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
RNF4P78317 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF4P78317 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF4P78317 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF4P78317 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.92■□□□□ 0.78
RNF4P78317 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.92■□□□□ 0.78
RNF4P78317 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.92■□□□□ 0.78
RNF4P78317 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RNF4P78317 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
RNF4P78317 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.91■□□□□ 0.78
RNF4P78317 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.91■□□□□ 0.78
RNF4P78317 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.91■□□□□ 0.78
RNF4P78317 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF4P78317 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF4P78317 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.91■□□□□ 0.78
RNF4P78317 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 AL162430.1-201ENST00000480705 870 ntBASIC19.91■□□□□ 0.78
RNF4P78317 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.91■□□□□ 0.78
RNF4P78317 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
RNF4P78317 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RNF4P78317 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
RNF4P78317 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
RNF4P78317 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.9■□□□□ 0.78
RNF4P78317 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.9■□□□□ 0.78
RNF4P78317 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RNF4P78317 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.9■□□□□ 0.78
RNF4P78317 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
RNF4P78317 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF4P78317 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF4P78317 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms