Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM3P62310 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM3P62310 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM3P62310 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
LSM3P62310 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LSM3P62310 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LSM3P62310 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM3P62310 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.37■□□□□ 0.69
LSM3P62310 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LSM3P62310 FEM1AP1-201ENST00000431297 1995 ntBASIC19.37■□□□□ 0.69
LSM3P62310 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.36■□□□□ 0.69
LSM3P62310 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.36■□□□□ 0.69
LSM3P62310 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LSM3P62310 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM3P62310 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LSM3P62310 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.35■□□□□ 0.69
LSM3P62310 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LSM3P62310 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LSM3P62310 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 AC022413.1-201ENST00000624602 984 ntBASIC19.35■□□□□ 0.69
LSM3P62310 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM3P62310 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.34■□□□□ 0.69
LSM3P62310 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
LSM3P62310 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.34■□□□□ 0.69
LSM3P62310 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.34■□□□□ 0.69
LSM3P62310 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.34■□□□□ 0.69
LSM3P62310 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.34■□□□□ 0.69
LSM3P62310 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
LSM3P62310 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM3P62310 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LSM3P62310 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.33■□□□□ 0.69
LSM3P62310 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LSM3P62310 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM3P62310 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.33■□□□□ 0.68
LSM3P62310 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LSM3P62310 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LSM3P62310 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LSM3P62310 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LSM3P62310 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms