Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.08■□□□□ 0.8
CLK1P49759 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLK1P49759 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLK1P49759 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLK1P49759 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLK1P49759 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLK1P49759 AC139530.1-201ENST00000575312 1977 ntBASIC20.07■□□□□ 0.8
CLK1P49759 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.07■□□□□ 0.8
CLK1P49759 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLK1P49759 AC131281.2-201ENST00000520478 145 ntBASIC20.07■□□□□ 0.8
CLK1P49759 AL121603.2-201ENST00000557373 2117 ntBASIC20.07■□□□□ 0.8
CLK1P49759 AC009086.3-201ENST00000623486 1008 ntBASIC20.07■□□□□ 0.8
CLK1P49759 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.07■□□□□ 0.8
CLK1P49759 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLK1P49759 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLK1P49759 AC073130.3-201ENST00000624389 2278 ntBASIC20.06■□□□□ 0.8
CLK1P49759 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.06■□□□□ 0.8
CLK1P49759 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.06■□□□□ 0.8
CLK1P49759 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CLK1P49759 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
CLK1P49759 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.06■□□□□ 0.8
CLK1P49759 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 DUX4L19-201ENST00000557448 1267 ntBASIC20.06■□□□□ 0.8
CLK1P49759 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CLK1P49759 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.06■□□□□ 0.8
CLK1P49759 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.06■□□□□ 0.8
CLK1P49759 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.06■□□□□ 0.8
CLK1P49759 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.06■□□□□ 0.8
CLK1P49759 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLK1P49759 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CLK1P49759 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.05■□□□□ 0.8
CLK1P49759 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.05■□□□□ 0.8
CLK1P49759 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.05■□□□□ 0.8
CLK1P49759 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 MIR4466-201ENST00000606121 54 ntBASIC20.05■□□□□ 0.8
CLK1P49759 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CLK1P49759 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLK1P49759 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLK1P49759 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.04■□□□□ 0.8
CLK1P49759 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CLK1P49759 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 AC026310.3-201ENST00000625186 2373 ntBASIC20.04■□□□□ 0.8
CLK1P49759 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.04■□□□□ 0.8
CLK1P49759 AL499627.2-201ENST00000606283 725 ntBASIC20.04■□□□□ 0.8
CLK1P49759 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLK1P49759 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CLK1P49759 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
CLK1P49759 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLK1P49759 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLK1P49759 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CLK1P49759 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLK1P49759 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CLK1P49759 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLK1P49759 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.03■□□□□ 0.8
CLK1P49759 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLK1P49759 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.03■□□□□ 0.8
CLK1P49759 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLK1P49759 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.02■□□□□ 0.8
CLK1P49759 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 AC099791.2-201ENST00000605725 427 ntBASIC20.02■□□□□ 0.8
CLK1P49759 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.02■□□□□ 0.8
CLK1P49759 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.02■□□□□ 0.8
CLK1P49759 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLK1P49759 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLK1P49759 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CLK1P49759 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms