Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RFX3P48380 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.16■□□□□ 0.82
RFX3P48380 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFX3P48380 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RFX3P48380 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.15■□□□□ 0.82
RFX3P48380 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RFX3P48380 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX3P48380 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RFX3P48380 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.15■□□□□ 0.82
RFX3P48380 AC106739.1-201ENST00000617035 715 ntBASIC20.15■□□□□ 0.82
RFX3P48380 AC087239.1-201ENST00000622671 572 ntBASIC20.15■□□□□ 0.82
RFX3P48380 AL031602.1-201ENST00000633169 911 ntBASIC20.15■□□□□ 0.82
RFX3P48380 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.15■□□□□ 0.82
RFX3P48380 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
RFX3P48380 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFX3P48380 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.14■□□□□ 0.82
RFX3P48380 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
RFX3P48380 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.14■□□□□ 0.81
RFX3P48380 AC126544.1-201ENST00000580842 1059 ntBASIC20.14■□□□□ 0.81
RFX3P48380 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
RFX3P48380 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RFX3P48380 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFX3P48380 AC139530.1-201ENST00000575312 1977 ntBASIC20.14■□□□□ 0.81
RFX3P48380 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RFX3P48380 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.13■□□□□ 0.81
RFX3P48380 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RFX3P48380 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 AL139246.5-201ENST00000606645 996 ntBASIC20.13■□□□□ 0.81
RFX3P48380 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.13■□□□□ 0.81
RFX3P48380 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
RFX3P48380 ECEL1P1-201ENST00000373592 1742 ntBASIC20.13■□□□□ 0.81
RFX3P48380 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RFX3P48380 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFX3P48380 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RFX3P48380 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RFX3P48380 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RFX3P48380 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.12■□□□□ 0.81
RFX3P48380 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
RFX3P48380 LINC00526-201ENST00000581067 1875 ntBASIC20.12■□□□□ 0.81
RFX3P48380 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.12■□□□□ 0.81
RFX3P48380 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.12■□□□□ 0.81
RFX3P48380 BX842568.3-201ENST00000418104 571 ntBASIC20.12■□□□□ 0.81
RFX3P48380 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.12■□□□□ 0.81
RFX3P48380 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.12■□□□□ 0.81
RFX3P48380 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RFX3P48380 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RFX3P48380 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RFX3P48380 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX3P48380 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
RFX3P48380 AC233992.3-201ENST00000607491 485 ntBASIC20.11■□□□□ 0.81
RFX3P48380 AC068587.7-201ENST00000641602 218 ntBASIC20.11■□□□□ 0.81
RFX3P48380 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.11■□□□□ 0.81
RFX3P48380 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFX3P48380 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RFX3P48380 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms