Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.66■■□□□ 1.06
CXCL12P48061 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.66■■□□□ 1.06
CXCL12P48061 OR10C1-204ENST00000622521 1039 ntBASIC21.66■■□□□ 1.06
CXCL12P48061 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.66■■□□□ 1.06
CXCL12P48061 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.66■■□□□ 1.06
CXCL12P48061 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.66■■□□□ 1.06
CXCL12P48061 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CXCL12P48061 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CXCL12P48061 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CXCL12P48061 AC008694.1-202ENST00000636953 945 ntBASIC21.65■■□□□ 1.06
CXCL12P48061 AP006294.2-201ENST00000641667 209 ntBASIC21.65■■□□□ 1.06
CXCL12P48061 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.65■■□□□ 1.06
CXCL12P48061 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CXCL12P48061 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.65■■□□□ 1.06
CXCL12P48061 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CXCL12P48061 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CXCL12P48061 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
CXCL12P48061 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.64■■□□□ 1.05
CXCL12P48061 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CXCL12P48061 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CXCL12P48061 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CXCL12P48061 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CXCL12P48061 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.63■■□□□ 1.05
CXCL12P48061 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CXCL12P48061 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CXCL12P48061 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
CXCL12P48061 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.63■■□□□ 1.05
CXCL12P48061 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.63■■□□□ 1.05
CXCL12P48061 AC092118.2-201ENST00000613495 667 ntBASIC21.63■■□□□ 1.05
CXCL12P48061 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.63■■□□□ 1.05
CXCL12P48061 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.63■■□□□ 1.05
CXCL12P48061 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CXCL12P48061 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CXCL12P48061 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CXCL12P48061 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CXCL12P48061 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 AC004812.2-201ENST00000611079 2094 ntBASIC21.62■■□□□ 1.05
CXCL12P48061 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CXCL12P48061 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.62■■□□□ 1.05
CXCL12P48061 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.62■■□□□ 1.05
CXCL12P48061 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.62■■□□□ 1.05
CXCL12P48061 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 RPS2P52-201ENST00000469610 820 ntBASIC21.62■■□□□ 1.05
CXCL12P48061 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.62■■□□□ 1.05
CXCL12P48061 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.62■■□□□ 1.05
CXCL12P48061 AC079089.2-201ENST00000531211 1277 ntBASIC21.62■■□□□ 1.05
CXCL12P48061 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.62■■□□□ 1.05
CXCL12P48061 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.62■■□□□ 1.05
CXCL12P48061 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
CXCL12P48061 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.62■■□□□ 1.05
CXCL12P48061 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CXCL12P48061 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CXCL12P48061 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CXCL12P48061 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.61■■□□□ 1.05
CXCL12P48061 AP004607.7-201ENST00000527152 1677 ntBASIC21.61■■□□□ 1.05
CXCL12P48061 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CXCL12P48061 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CXCL12P48061 AL512625.2-201ENST00000417533 625 ntBASIC21.61■■□□□ 1.05
CXCL12P48061 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.61■■□□□ 1.05
CXCL12P48061 AC007322.4-201ENST00000509611 723 ntBASIC21.61■■□□□ 1.05
CXCL12P48061 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.61■■□□□ 1.05
CXCL12P48061 AC069236.1-201ENST00000604339 616 ntBASIC21.61■■□□□ 1.05
CXCL12P48061 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.61■■□□□ 1.05
CXCL12P48061 LINC01124-201ENST00000409786 2117 ntBASIC21.61■■□□□ 1.05
CXCL12P48061 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.61■■□□□ 1.05
CXCL12P48061 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CXCL12P48061 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CXCL12P48061 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CXCL12P48061 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CXCL12P48061 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CXCL12P48061 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.6■■□□□ 1.05
CXCL12P48061 DUSP5P2-201ENST00000426873 1033 ntBASIC21.6■■□□□ 1.05
CXCL12P48061 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CXCL12P48061 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.6■■□□□ 1.05
CXCL12P48061 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CXCL12P48061 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CXCL12P48061 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CXCL12P48061 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CXCL12P48061 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CXCL12P48061 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CXCL12P48061 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.59■■□□□ 1.05
CXCL12P48061 RARRES2P4-201ENST00000514074 484 ntBASIC21.59■■□□□ 1.05
CXCL12P48061 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CXCL12P48061 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms