Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMS1P48059 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS1P48059 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS1P48059 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 GUSBP5-201ENST00000418136 578 ntBASIC19.73■□□□□ 0.75
LIMS1P48059 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMS1P48059 AL117332.1-201ENST00000622628 974 ntBASIC19.73■□□□□ 0.75
LIMS1P48059 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.73■□□□□ 0.75
LIMS1P48059 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
LIMS1P48059 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIMS1P48059 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMS1P48059 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMS1P48059 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.72■□□□□ 0.75
LIMS1P48059 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMS1P48059 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LIMS1P48059 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMS1P48059 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS1P48059 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS1P48059 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS1P48059 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMS1P48059 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMS1P48059 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS1P48059 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS1P48059 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMS1P48059 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
LIMS1P48059 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.7■□□□□ 0.74
LIMS1P48059 AC241377.3-202ENST00000626088 1088 ntBASIC19.7■□□□□ 0.74
LIMS1P48059 AC241585.3-202ENST00000628937 1088 ntBASIC19.7■□□□□ 0.74
LIMS1P48059 AC245100.8-202ENST00000629247 1058 ntBASIC19.7■□□□□ 0.74
LIMS1P48059 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMS1P48059 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMS1P48059 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 AC133637.1-201ENST00000624115 1537 ntBASIC19.7■□□□□ 0.74
LIMS1P48059 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMS1P48059 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS1P48059 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMS1P48059 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
LIMS1P48059 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS1P48059 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMS1P48059 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS1P48059 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMS1P48059 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS1P48059 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMS1P48059 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS1P48059 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS1P48059 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 OR7E47P-201ENST00000546390 1422 ntBASIC19.68■□□□□ 0.74
LIMS1P48059 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIMS1P48059 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMS1P48059 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMS1P48059 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMS1P48059 AC104564.3-201ENST00000582367 638 ntBASIC19.68■□□□□ 0.74
LIMS1P48059 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
LIMS1P48059 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.68■□□□□ 0.74
LIMS1P48059 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS1P48059 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS1P48059 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS1P48059 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LIMS1P48059 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMS1P48059 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMS1P48059 AC006455.2-201ENST00000429931 906 ntBASIC19.67■□□□□ 0.74
LIMS1P48059 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMS1P48059 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS1P48059 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS1P48059 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS1P48059 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS1P48059 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS1P48059 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LIMS1P48059 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS1P48059 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS1P48059 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS1P48059 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS1P48059 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS1P48059 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms