Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMS3P0CW19 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMS3P0CW19 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMS3P0CW19 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
LIMS3P0CW19 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMS3P0CW19 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
LIMS3P0CW19 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 AL499627.2-201ENST00000606283 725 ntBASIC19.13■□□□□ 0.65
LIMS3P0CW19 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMS3P0CW19 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMS3P0CW19 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 KRT8P33-201ENST00000508125 1423 ntBASIC19.12■□□□□ 0.65
LIMS3P0CW19 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
LIMS3P0CW19 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMS3P0CW19 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMS3P0CW19 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 YBX1P4-201ENST00000392794 808 ntBASIC19.11■□□□□ 0.65
LIMS3P0CW19 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMS3P0CW19 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.11■□□□□ 0.65
LIMS3P0CW19 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMS3P0CW19 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 AC079089.2-201ENST00000531211 1277 ntBASIC19.1■□□□□ 0.65
LIMS3P0CW19 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 AC092667.1-201ENST00000434301 2586 ntBASIC19.1■□□□□ 0.65
LIMS3P0CW19 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMS3P0CW19 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMS3P0CW19 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 AL121603.2-201ENST00000557373 2117 ntBASIC19.09■□□□□ 0.65
LIMS3P0CW19 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
LIMS3P0CW19 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMS3P0CW19 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
LIMS3P0CW19 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMS3P0CW19 AC104564.3-201ENST00000582367 638 ntBASIC19.09■□□□□ 0.65
LIMS3P0CW19 AL031848.2-201ENST00000607670 837 ntBASIC19.09■□□□□ 0.65
LIMS3P0CW19 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMS3P0CW19 AL031602.1-201ENST00000633169 911 ntBASIC19.09■□□□□ 0.65
LIMS3P0CW19 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms