Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MIR3621-201ENST00000580529 85 ntBASIC20.46■□□□□ 0.87
CPSF4O95639 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.46■□□□□ 0.87
CPSF4O95639 AL031602.1-201ENST00000633169 911 ntBASIC20.46■□□□□ 0.87
CPSF4O95639 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4O95639 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
CPSF4O95639 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CPSF4O95639 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CPSF4O95639 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.46■□□□□ 0.87
CPSF4O95639 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4O95639 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.45■□□□□ 0.87
CPSF4O95639 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4O95639 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4O95639 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
CPSF4O95639 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 AC079089.2-201ENST00000531211 1277 ntBASIC20.45■□□□□ 0.86
CPSF4O95639 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4O95639 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.45■□□□□ 0.86
CPSF4O95639 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.45■□□□□ 0.86
CPSF4O95639 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4O95639 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CPSF4O95639 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4O95639 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.44■□□□□ 0.86
CPSF4O95639 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CPSF4O95639 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4O95639 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.44■□□□□ 0.86
CPSF4O95639 MIR3181-201ENST00000578512 73 ntBASIC20.44■□□□□ 0.86
CPSF4O95639 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CPSF4O95639 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CPSF4O95639 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CPSF4O95639 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4O95639 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
CPSF4O95639 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CPSF4O95639 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.43■□□□□ 0.86
CPSF4O95639 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4O95639 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4O95639 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.42■□□□□ 0.86
CPSF4O95639 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 SRD5A1P1-201ENST00000442297 786 ntBASIC20.42■□□□□ 0.86
CPSF4O95639 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.42■□□□□ 0.86
CPSF4O95639 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.42■□□□□ 0.86
CPSF4O95639 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4O95639 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CPSF4O95639 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 AC244015.2-201ENST00000616358 1861 ntBASIC20.41■□□□□ 0.86
CPSF4O95639 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CPSF4O95639 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4O95639 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms