Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN9O95484 AP005435.1-201ENST00000529293 1178 ntBASIC20.84■□□□□ 0.93
CLDN9O95484 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN9O95484 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
CLDN9O95484 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
CLDN9O95484 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CLDN9O95484 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
CLDN9O95484 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.84■□□□□ 0.93
CLDN9O95484 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN9O95484 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN9O95484 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN9O95484 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN9O95484 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN9O95484 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN9O95484 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.83■□□□□ 0.92
CLDN9O95484 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
CLDN9O95484 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN9O95484 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.82■□□□□ 0.92
CLDN9O95484 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN9O95484 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CLDN9O95484 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CLDN9O95484 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.81■□□□□ 0.92
CLDN9O95484 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN9O95484 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.81■□□□□ 0.92
CLDN9O95484 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN9O95484 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN9O95484 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN9O95484 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.81■□□□□ 0.92
CLDN9O95484 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CLDN9O95484 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN9O95484 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLDN9O95484 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CLDN9O95484 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 AC244015.2-201ENST00000616358 1861 ntBASIC20.8■□□□□ 0.92
CLDN9O95484 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CLDN9O95484 UNC93B3-201ENST00000308076 687 ntBASIC20.8■□□□□ 0.92
CLDN9O95484 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.8■□□□□ 0.92
CLDN9O95484 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CLDN9O95484 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLDN9O95484 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.8■□□□□ 0.92
CLDN9O95484 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLDN9O95484 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.79■□□□□ 0.92
CLDN9O95484 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.79■□□□□ 0.92
CLDN9O95484 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN9O95484 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.79■□□□□ 0.92
CLDN9O95484 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CLDN9O95484 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.79■□□□□ 0.92
CLDN9O95484 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
CLDN9O95484 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLDN9O95484 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN9O95484 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLDN9O95484 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.78■□□□□ 0.92
CLDN9O95484 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLDN9O95484 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN9O95484 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.78■□□□□ 0.92
CLDN9O95484 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLDN9O95484 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.77■□□□□ 0.92
CLDN9O95484 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.77■□□□□ 0.92
CLDN9O95484 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.77■□□□□ 0.92
CLDN9O95484 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLDN9O95484 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.77■□□□□ 0.92
CLDN9O95484 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 MIR4767-201ENST00000582827 78 ntBASIC20.77■□□□□ 0.92
CLDN9O95484 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.77■□□□□ 0.92
CLDN9O95484 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.77■□□□□ 0.92
CLDN9O95484 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.77■□□□□ 0.92
CLDN9O95484 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN9O95484 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLDN9O95484 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms