Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.77■■□□□ 1.08
USP1O94782 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.77■■□□□ 1.08
USP1O94782 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.77■■□□□ 1.08
USP1O94782 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP1O94782 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.77■■□□□ 1.08
USP1O94782 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
USP1O94782 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP1O94782 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.77■■□□□ 1.07
USP1O94782 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
USP1O94782 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP1O94782 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP1O94782 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.76■■□□□ 1.07
USP1O94782 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP1O94782 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USP1O94782 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
USP1O94782 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP1O94782 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
USP1O94782 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
USP1O94782 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
USP1O94782 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
USP1O94782 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.75■■□□□ 1.07
USP1O94782 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.75■■□□□ 1.07
USP1O94782 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.75■■□□□ 1.07
USP1O94782 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.75■■□□□ 1.07
USP1O94782 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
USP1O94782 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP1O94782 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.74■■□□□ 1.07
USP1O94782 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.74■■□□□ 1.07
USP1O94782 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 MIR4466-201ENST00000606121 54 ntBASIC21.74■■□□□ 1.07
USP1O94782 AL138724.1-201ENST00000606771 1088 ntBASIC21.74■■□□□ 1.07
USP1O94782 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
USP1O94782 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP1O94782 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.74■■□□□ 1.07
USP1O94782 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.74■■□□□ 1.07
USP1O94782 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
USP1O94782 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.73■■□□□ 1.07
USP1O94782 AC131281.2-201ENST00000520478 145 ntBASIC21.73■■□□□ 1.07
USP1O94782 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.73■■□□□ 1.07
USP1O94782 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.73■■□□□ 1.07
USP1O94782 DUX4L19-201ENST00000557448 1267 ntBASIC21.73■■□□□ 1.07
USP1O94782 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.73■■□□□ 1.07
USP1O94782 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP1O94782 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
USP1O94782 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
USP1O94782 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.72■■□□□ 1.07
USP1O94782 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.72■■□□□ 1.07
USP1O94782 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 AC087239.1-201ENST00000622671 572 ntBASIC21.72■■□□□ 1.07
USP1O94782 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.72■■□□□ 1.07
USP1O94782 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.72■■□□□ 1.07
USP1O94782 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP1O94782 OR7E47P-201ENST00000546390 1422 ntBASIC21.72■■□□□ 1.07
USP1O94782 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 AC244015.2-201ENST00000616358 1861 ntBASIC21.71■■□□□ 1.07
USP1O94782 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.71■■□□□ 1.07
USP1O94782 SYT6-210ENST00000641643 1587 ntBASIC21.71■■□□□ 1.07
USP1O94782 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 SERBP1P1-201ENST00000396021 1160 ntBASIC21.71■■□□□ 1.07
USP1O94782 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.71■■□□□ 1.07
USP1O94782 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.71■■□□□ 1.07
USP1O94782 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP1O94782 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP1O94782 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
USP1O94782 AC010141.3-201ENST00000456659 717 ntBASIC21.7■■□□□ 1.06
USP1O94782 AC010525.1-201ENST00000585559 441 ntBASIC21.7■■□□□ 1.06
USP1O94782 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
USP1O94782 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP1O94782 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP1O94782 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP1O94782 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP1O94782 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms