Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC27.84■■■□□ 2.05
PTCD1O75127 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.84■■■□□ 2.05
PTCD1O75127 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
PTCD1O75127 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.84■■■□□ 2.05
PTCD1O75127 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.84■■■□□ 2.05
PTCD1O75127 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
PTCD1O75127 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
PTCD1O75127 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PTCD1O75127 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.83■■■□□ 2.05
PTCD1O75127 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
PTCD1O75127 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC27.82■■■□□ 2.04
PTCD1O75127 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.82■■■□□ 2.04
PTCD1O75127 CNN2P6-201ENST00000439038 900 ntBASIC27.82■■■□□ 2.04
PTCD1O75127 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC27.82■■■□□ 2.04
PTCD1O75127 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC27.82■■■□□ 2.04
PTCD1O75127 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC27.82■■■□□ 2.04
PTCD1O75127 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC27.82■■■□□ 2.04
PTCD1O75127 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
PTCD1O75127 AP004607.7-201ENST00000527152 1677 ntBASIC27.81■■■□□ 2.04
PTCD1O75127 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTCD1O75127 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC27.81■■■□□ 2.04
PTCD1O75127 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTCD1O75127 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
PTCD1O75127 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.81■■■□□ 2.04
PTCD1O75127 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.81■■■□□ 2.04
PTCD1O75127 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.81■■■□□ 2.04
PTCD1O75127 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC27.81■■■□□ 2.04
PTCD1O75127 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTCD1O75127 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PTCD1O75127 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.8■■■□□ 2.04
PTCD1O75127 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
PTCD1O75127 KRT18P6-201ENST00000555540 1265 ntBASIC27.8■■■□□ 2.04
PTCD1O75127 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
PTCD1O75127 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTCD1O75127 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTCD1O75127 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PTCD1O75127 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC27.79■■■□□ 2.04
PTCD1O75127 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
PTCD1O75127 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.79■■■□□ 2.04
PTCD1O75127 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
PTCD1O75127 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC27.78■■■□□ 2.04
PTCD1O75127 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 SLC29A4P1-201ENST00000398760 971 ntBASIC27.78■■■□□ 2.04
PTCD1O75127 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.78■■■□□ 2.04
PTCD1O75127 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PTCD1O75127 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
PTCD1O75127 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC27.77■■■□□ 2.04
PTCD1O75127 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC27.77■■■□□ 2.04
PTCD1O75127 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
PTCD1O75127 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
PTCD1O75127 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC27.77■■■□□ 2.04
PTCD1O75127 AC010141.2-201ENST00000452426 721 ntBASIC27.77■■■□□ 2.04
PTCD1O75127 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.77■■■□□ 2.04
PTCD1O75127 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.77■■■□□ 2.04
PTCD1O75127 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.77■■■□□ 2.04
PTCD1O75127 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
PTCD1O75127 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
PTCD1O75127 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTCD1O75127 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTCD1O75127 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTCD1O75127 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PTCD1O75127 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.76■■■□□ 2.03
PTCD1O75127 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.76■■■□□ 2.03
PTCD1O75127 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.76■■■□□ 2.03
PTCD1O75127 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC27.76■■■□□ 2.03
PTCD1O75127 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC27.76■■■□□ 2.03
PTCD1O75127 AC138907.5-202ENST00000569484 235 ntBASIC27.76■■■□□ 2.03
PTCD1O75127 AC010536.3-201ENST00000620306 533 ntBASIC27.76■■■□□ 2.03
PTCD1O75127 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
PTCD1O75127 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTCD1O75127 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTCD1O75127 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
PTCD1O75127 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC27.75■■■□□ 2.03
PTCD1O75127 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC27.75■■■□□ 2.03
PTCD1O75127 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC27.75■■■□□ 2.03
PTCD1O75127 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC27.75■■■□□ 2.03
PTCD1O75127 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC27.75■■■□□ 2.03
PTCD1O75127 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTCD1O75127 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PTCD1O75127 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
PTCD1O75127 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC27.74■■■□□ 2.03
PTCD1O75127 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
PTCD1O75127 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
PTCD1O75127 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
PTCD1O75127 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC27.74■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms