Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.44■□□□□ 0.54
XRCC3O43542 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC18.44■□□□□ 0.54
XRCC3O43542 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.44■□□□□ 0.54
XRCC3O43542 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.44■□□□□ 0.54
XRCC3O43542 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
XRCC3O43542 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
XRCC3O43542 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.44■□□□□ 0.54
XRCC3O43542 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
XRCC3O43542 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
XRCC3O43542 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.44■□□□□ 0.54
XRCC3O43542 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
XRCC3O43542 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.43■□□□□ 0.54
XRCC3O43542 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.43■□□□□ 0.54
XRCC3O43542 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
XRCC3O43542 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
XRCC3O43542 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
XRCC3O43542 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
XRCC3O43542 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
XRCC3O43542 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 PVT1_1.1-201ENST00000615125 194 ntBASIC18.42■□□□□ 0.54
XRCC3O43542 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
XRCC3O43542 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
XRCC3O43542 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.42■□□□□ 0.54
XRCC3O43542 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
XRCC3O43542 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
XRCC3O43542 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.41■□□□□ 0.54
XRCC3O43542 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.41■□□□□ 0.54
XRCC3O43542 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.41■□□□□ 0.54
XRCC3O43542 AC104564.3-201ENST00000582367 638 ntBASIC18.41■□□□□ 0.54
XRCC3O43542 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
XRCC3O43542 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
XRCC3O43542 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.41■□□□□ 0.54
XRCC3O43542 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
XRCC3O43542 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
XRCC3O43542 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.4■□□□□ 0.54
XRCC3O43542 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
XRCC3O43542 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.4■□□□□ 0.54
XRCC3O43542 MIR6722-201ENST00000617286 78 ntBASIC18.4■□□□□ 0.54
XRCC3O43542 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.4■□□□□ 0.54
XRCC3O43542 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
XRCC3O43542 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
XRCC3O43542 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
XRCC3O43542 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
XRCC3O43542 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
XRCC3O43542 LINC01006-201ENST00000333319 2292 ntBASIC18.39■□□□□ 0.54
XRCC3O43542 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.39■□□□□ 0.54
XRCC3O43542 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
XRCC3O43542 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
XRCC3O43542 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.39■□□□□ 0.53
XRCC3O43542 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.39■□□□□ 0.53
XRCC3O43542 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.39■□□□□ 0.53
XRCC3O43542 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
XRCC3O43542 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
XRCC3O43542 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
XRCC3O43542 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
XRCC3O43542 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.38■□□□□ 0.53
XRCC3O43542 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.38■□□□□ 0.53
XRCC3O43542 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms