Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22■■□□□ 1.11
CBX4O00257 AC233723.2-201ENST00000623798 2106 ntBASIC22■■□□□ 1.11
CBX4O00257 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22■■□□□ 1.11
CBX4O00257 KRT18P5-201ENST00000436075 1291 ntBASIC22■■□□□ 1.11
CBX4O00257 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22■■□□□ 1.11
CBX4O00257 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CBX4O00257 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22■■□□□ 1.11
CBX4O00257 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CBX4O00257 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
CBX4O00257 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CBX4O00257 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.99■■□□□ 1.11
CBX4O00257 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 TERF1P2-201ENST00000583350 1212 ntBASIC21.99■■□□□ 1.11
CBX4O00257 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.99■■□□□ 1.11
CBX4O00257 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.99■■□□□ 1.11
CBX4O00257 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.99■■□□□ 1.11
CBX4O00257 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
CBX4O00257 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CBX4O00257 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.98■■□□□ 1.11
CBX4O00257 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.98■■□□□ 1.11
CBX4O00257 AC133561.1-201ENST00000568600 2415 ntBASIC21.98■■□□□ 1.11
CBX4O00257 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.98■■□□□ 1.11
CBX4O00257 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.98■■□□□ 1.11
CBX4O00257 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 KRT18P14-201ENST00000534205 1250 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L2-201ENST00000561772 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L6-201ENST00000626483 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L1-201ENST00000627662 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L8-201ENST00000629013 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L3-201ENST00000630187 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L7-201ENST00000630678 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 DUX4L5-201ENST00000630834 1275 ntBASIC21.98■■□□□ 1.11
CBX4O00257 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
CBX4O00257 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CBX4O00257 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CBX4O00257 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CBX4O00257 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CBX4O00257 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.97■■□□□ 1.11
CBX4O00257 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.97■■□□□ 1.11
CBX4O00257 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.97■■□□□ 1.11
CBX4O00257 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CBX4O00257 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CBX4O00257 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CBX4O00257 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CBX4O00257 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.97■■□□□ 1.11
CBX4O00257 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CBX4O00257 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CBX4O00257 AC009237.3-201ENST00000393279 1427 ntBASIC21.97■■□□□ 1.11
CBX4O00257 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.96■■□□□ 1.11
CBX4O00257 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.96■■□□□ 1.11
CBX4O00257 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CBX4O00257 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
CBX4O00257 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.96■■□□□ 1.11
CBX4O00257 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 AC005224.4-201ENST00000583262 1652 ntBASIC21.95■■□□□ 1.1
CBX4O00257 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CBX4O00257 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
CBX4O00257 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.95■■□□□ 1.1
CBX4O00257 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms