Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 KRT19P1-201ENST00000405746 1186 ntBASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC006015.1-201ENST00000429970 570 ntBASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC137761.2-201ENST00000561729 223 ntBASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 AC145350.3-201ENST00000569033 163 ntBASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 RARRES2P11-201ENST00000635158 484 ntBASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SMIM28A0A1B0GU29 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 KRT87P-202ENST00000534226 1464 ntBASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMIM28A0A1B0GU29 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 ESRRAP2-201ENST00000418437 1549 ntBASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SMIM28A0A1B0GU29 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
SMIM28A0A1B0GU29 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SMIM28A0A1B0GU29 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 AC016769.1-201ENST00000409132 1010 ntBASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 AC104187.1-201ENST00000607510 612 ntBASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.15■■□□□ 1.3
SMIM28A0A1B0GU29 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
SMIM28A0A1B0GU29 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SMIM28A0A1B0GU29 AP006587.3-201ENST00000525742 1516 ntBASIC23.14■■□□□ 1.3
SMIM28A0A1B0GU29 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms