Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN3AQ9NY46 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 KRT18P14-201ENST00000534205 1250 ntBASIC20.5■□□□□ 0.87
SCN3AQ9NY46 TPRG1LP1-201ENST00000598702 760 ntBASIC20.5■□□□□ 0.87
SCN3AQ9NY46 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 AC105233.4-201ENST00000642045 216 ntBASIC20.5■□□□□ 0.87
SCN3AQ9NY46 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.5■□□□□ 0.87
SCN3AQ9NY46 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN3AQ9NY46 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN3AQ9NY46 AC092053.2-201ENST00000640557 1818 ntBASIC20.49■□□□□ 0.87
SCN3AQ9NY46 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 BX005040.4-201ENST00000637145 1518 ntBASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SCN3AQ9NY46 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.47■□□□□ 0.87
SCN3AQ9NY46 AL117328.2-201ENST00000624617 1940 ntBASIC20.46■□□□□ 0.87
SCN3AQ9NY46 AC242852.2-201ENST00000615738 1807 ntBASIC20.46■□□□□ 0.87
SCN3AQ9NY46 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 AC097381.1-201ENST00000429019 1296 ntBASIC20.46■□□□□ 0.87
SCN3AQ9NY46 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN3AQ9NY46 AL034346.1-201ENST00000568244 1277 ntBASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms