Protein–RNA interactions for Protein: Q9NQ40

SLC52A3, Solute carrier family 52, riboflavin transporter, member 3, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC52A3Q9NQ40 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC52A3Q9NQ40 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC52A3Q9NQ40 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC52A3Q9NQ40 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC52A3Q9NQ40 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 AC010997.5-201ENST00000609182 354 ntBASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC52A3Q9NQ40 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SLC52A3Q9NQ40 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC52A3Q9NQ40 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC52A3Q9NQ40 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
SLC52A3Q9NQ40 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
SLC52A3Q9NQ40 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 KRT125P-201ENST00000546827 989 ntBASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC52A3Q9NQ40 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 AL451085.2-201ENST00000605085 799 ntBASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SLC52A3Q9NQ40 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC52A3Q9NQ40 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 AL157384.1-201ENST00000445995 2473 ntBASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 AC133637.1-201ENST00000624115 1537 ntBASIC20.48■□□□□ 0.87
SLC52A3Q9NQ40 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC52A3Q9NQ40 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.46■□□□□ 0.87
SLC52A3Q9NQ40 AC006455.2-201ENST00000429931 906 ntBASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms