Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 AL138781.1-201ENST00000566567 1274 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 UBE2DNL-204ENST00000602536 740 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 AC005181.1-201ENST00000604782 1256 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC27.66■■■□□ 2.02
USP42Q9H9J4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USP42Q9H9J4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USP42Q9H9J4 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC27.66■■■□□ 2.02
USP42Q9H9J4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP42Q9H9J4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP42Q9H9J4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC27.66■■■□□ 2.02
USP42Q9H9J4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.66■■■□□ 2.02
USP42Q9H9J4 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
USP42Q9H9J4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.65■■■□□ 2.02
USP42Q9H9J4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
USP42Q9H9J4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USP42Q9H9J4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
USP42Q9H9J4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC27.65■■■□□ 2.02
USP42Q9H9J4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
USP42Q9H9J4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC27.64■■■□□ 2.02
USP42Q9H9J4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC27.64■■■□□ 2.02
USP42Q9H9J4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
USP42Q9H9J4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.64■■■□□ 2.01
USP42Q9H9J4 AC007322.1-201ENST00000426983 750 ntBASIC27.64■■■□□ 2.01
USP42Q9H9J4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.64■■■□□ 2.01
USP42Q9H9J4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
USP42Q9H9J4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
USP42Q9H9J4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
USP42Q9H9J4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC27.64■■■□□ 2.01
USP42Q9H9J4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
USP42Q9H9J4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
USP42Q9H9J4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.63■■■□□ 2.01
USP42Q9H9J4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USP42Q9H9J4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.63■■■□□ 2.01
USP42Q9H9J4 MIR4651-201ENST00000582622 73 ntBASIC27.63■■■□□ 2.01
USP42Q9H9J4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
USP42Q9H9J4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
USP42Q9H9J4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USP42Q9H9J4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC27.61■■■□□ 2.01
USP42Q9H9J4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC27.61■■■□□ 2.01
USP42Q9H9J4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
USP42Q9H9J4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.61■■■□□ 2.01
USP42Q9H9J4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.61■■■□□ 2.01
USP42Q9H9J4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
USP42Q9H9J4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USP42Q9H9J4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USP42Q9H9J4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USP42Q9H9J4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USP42Q9H9J4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
USP42Q9H9J4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC27.6■■■□□ 2.01
USP42Q9H9J4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
USP42Q9H9J4 AC069152.1-201ENST00000438030 544 ntBASIC27.59■■■□□ 2.01
USP42Q9H9J4 MYCNOS-205ENST00000641950 531 ntBASIC27.59■■■□□ 2.01
USP42Q9H9J4 AC009237.3-201ENST00000393279 1427 ntBASIC27.59■■■□□ 2.01
USP42Q9H9J4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
USP42Q9H9J4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
USP42Q9H9J4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC27.58■■■□□ 2.01
USP42Q9H9J4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
USP42Q9H9J4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
USP42Q9H9J4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC27.58■■■□□ 2.01
USP42Q9H9J4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.58■■■□□ 2.01
USP42Q9H9J4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.58■■■□□ 2.01
USP42Q9H9J4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
USP42Q9H9J4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.58■■■□□ 2.01
USP42Q9H9J4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.57■■■□□ 2
USP42Q9H9J4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
USP42Q9H9J4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.57■■■□□ 2
USP42Q9H9J4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC27.57■■■□□ 2
USP42Q9H9J4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USP42Q9H9J4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms