Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 MFSD11-216ENST00000590393 1141 ntBASIC31.48■■■□□ 2.63
SENP3Q9H4L4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3Q9H4L4 AC079630.1-202ENST00000618127 1840 ntBASIC31.47■■■□□ 2.63
SENP3Q9H4L4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SENP3Q9H4L4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SENP3Q9H4L4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC31.47■■■□□ 2.63
SENP3Q9H4L4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SENP3Q9H4L4 AL138781.1-201ENST00000566567 1274 ntBASIC31.47■■■□□ 2.63
SENP3Q9H4L4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC31.47■■■□□ 2.63
SENP3Q9H4L4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 AC004777.1-201ENST00000624317 287 ntBASIC31.46■■■□□ 2.63
SENP3Q9H4L4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3Q9H4L4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC31.45■■■□□ 2.63
SENP3Q9H4L4 AC079140.4-201ENST00000507448 529 ntBASIC31.45■■■□□ 2.63
SENP3Q9H4L4 TMF1P1-201ENST00000576058 373 ntBASIC31.45■■■□□ 2.63
SENP3Q9H4L4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC31.45■■■□□ 2.62
SENP3Q9H4L4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 AC083906.2-201ENST00000511578 360 ntBASIC31.44■■■□□ 2.62
SENP3Q9H4L4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 LMO3-212ENST00000535535 1488 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 AC092809.4-201ENST00000420350 1323 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3Q9H4L4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 NPM1P28-201ENST00000492269 840 ntBASIC31.43■■■□□ 2.62
SENP3Q9H4L4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC31.43■■■□□ 2.62
SENP3Q9H4L4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 AP001542.1-201ENST00000591314 200 ntBASIC31.42■■■□□ 2.62
SENP3Q9H4L4 AC022960.2-201ENST00000616300 666 ntBASIC31.42■■■□□ 2.62
SENP3Q9H4L4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3Q9H4L4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 AC021321.1-201ENST00000607397 1113 ntBASIC31.41■■■□□ 2.62
SENP3Q9H4L4 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC31.41■■■□□ 2.62
SENP3Q9H4L4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 MTND2P9-201ENST00000422293 931 ntBASIC31.4■■■□□ 2.62
SENP3Q9H4L4 AC104187.1-201ENST00000607510 612 ntBASIC31.4■■■□□ 2.62
SENP3Q9H4L4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC31.4■■■□□ 2.62
SENP3Q9H4L4 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 AC142086.2-201ENST00000569753 217 ntBASIC31.39■■■□□ 2.62
SENP3Q9H4L4 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SENP3Q9H4L4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 CSNK1A1-209ENST00000606299 1075 ntTSL 3 BASIC31.38■■■□□ 2.61
SENP3Q9H4L4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms