Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 CROCCP5-201ENST00000436658 830 ntBASIC18.99■□□□□ 0.63
LIME1Q9H400 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
LIME1Q9H400 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIME1Q9H400 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.99■□□□□ 0.63
LIME1Q9H400 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
LIME1Q9H400 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.99■□□□□ 0.63
LIME1Q9H400 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.99■□□□□ 0.63
LIME1Q9H400 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LIME1Q9H400 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIME1Q9H400 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.98■□□□□ 0.63
LIME1Q9H400 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.98■□□□□ 0.63
LIME1Q9H400 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.98■□□□□ 0.63
LIME1Q9H400 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LIME1Q9H400 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.98■□□□□ 0.63
LIME1Q9H400 AL109923.1-201ENST00000618799 583 ntBASIC18.98■□□□□ 0.63
LIME1Q9H400 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIME1Q9H400 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 AC004854.2-201ENST00000608450 1441 ntBASIC18.98■□□□□ 0.63
LIME1Q9H400 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIME1Q9H400 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 AP004607.4-201ENST00000530158 1459 ntBASIC18.97■□□□□ 0.63
LIME1Q9H400 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.97■□□□□ 0.63
LIME1Q9H400 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 AC006970.2-201ENST00000450065 779 ntBASIC18.97■□□□□ 0.63
LIME1Q9H400 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.97■□□□□ 0.63
LIME1Q9H400 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.97■□□□□ 0.63
LIME1Q9H400 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.97■□□□□ 0.63
LIME1Q9H400 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.97■□□□□ 0.63
LIME1Q9H400 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIME1Q9H400 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIME1Q9H400 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIME1Q9H400 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIME1Q9H400 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.96■□□□□ 0.63
LIME1Q9H400 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIME1Q9H400 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIME1Q9H400 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.96■□□□□ 0.63
LIME1Q9H400 BID-214ENST00000617586 542 ntTSL 5 BASIC18.96■□□□□ 0.63
LIME1Q9H400 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.96■□□□□ 0.63
LIME1Q9H400 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIME1Q9H400 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
LIME1Q9H400 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.96■□□□□ 0.63
LIME1Q9H400 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIME1Q9H400 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.96■□□□□ 0.63
LIME1Q9H400 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIME1Q9H400 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.95■□□□□ 0.62
LIME1Q9H400 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIME1Q9H400 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.95■□□□□ 0.62
LIME1Q9H400 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 TPRG1LP1-201ENST00000598702 760 ntBASIC18.95■□□□□ 0.62
LIME1Q9H400 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIME1Q9H400 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.95■□□□□ 0.62
LIME1Q9H400 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIME1Q9H400 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.94■□□□□ 0.62
LIME1Q9H400 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.94■□□□□ 0.62
LIME1Q9H400 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIME1Q9H400 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.94■□□□□ 0.62
LIME1Q9H400 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.94■□□□□ 0.62
LIME1Q9H400 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.94■□□□□ 0.62
LIME1Q9H400 TMEM191A-211ENST00000637163 1067 ntBASIC18.94■□□□□ 0.62
LIME1Q9H400 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIME1Q9H400 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIME1Q9H400 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIME1Q9H400 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms