Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS50Q96JG6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS50Q96JG6 CA15P2-201ENST00000611168 834 ntBASIC20.99■□□□□ 0.95
VPS50Q96JG6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS50Q96JG6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS50Q96JG6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS50Q96JG6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS50Q96JG6 FP325331.1-202ENST00000623531 1380 ntBASIC20.98■□□□□ 0.95
VPS50Q96JG6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 BX842568.3-201ENST00000418104 571 ntBASIC20.98■□□□□ 0.95
VPS50Q96JG6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 ZNRF2P3-201ENST00000424200 374 ntBASIC20.98■□□□□ 0.95
VPS50Q96JG6 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 AC008764.7-201ENST00000593779 1081 ntBASIC20.98■□□□□ 0.95
VPS50Q96JG6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS50Q96JG6 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS50Q96JG6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS50Q96JG6 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS50Q96JG6 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 AC233992.3-201ENST00000607491 485 ntBASIC20.97■□□□□ 0.95
VPS50Q96JG6 pRNA.6-201ENST00000610482 90 ntBASIC20.97■□□□□ 0.95
VPS50Q96JG6 pRNA.5-201ENST00000612139 90 ntBASIC20.97■□□□□ 0.95
VPS50Q96JG6 pRNA.11-201ENST00000618423 90 ntBASIC20.97■□□□□ 0.95
VPS50Q96JG6 pRNA.13-201ENST00000619112 90 ntBASIC20.97■□□□□ 0.95
VPS50Q96JG6 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS50Q96JG6 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS50Q96JG6 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS50Q96JG6 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS50Q96JG6 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VPS50Q96JG6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS50Q96JG6 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VPS50Q96JG6 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VPS50Q96JG6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.95■□□□□ 0.95
VPS50Q96JG6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VPS50Q96JG6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VPS50Q96JG6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
VPS50Q96JG6 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 AC006455.2-201ENST00000429931 906 ntBASIC20.95■□□□□ 0.94
VPS50Q96JG6 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS50Q96JG6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
VPS50Q96JG6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS50Q96JG6 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS50Q96JG6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VPS50Q96JG6 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS50Q96JG6 AC099791.1-201ENST00000416440 715 ntBASIC20.94■□□□□ 0.94
VPS50Q96JG6 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VPS50Q96JG6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS50Q96JG6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS50Q96JG6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms