Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 MIR572-201ENST00000384983 95 ntBASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 AC012414.1-201ENST00000556676 535 ntBASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 MIR6084-201ENST00000622012 110 ntBASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NKX2-3Q8TAU0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
NKX2-3Q8TAU0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
NKX2-3Q8TAU0 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
NKX2-3Q8TAU0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
NKX2-3Q8TAU0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 AC010141.3-201ENST00000456659 717 ntBASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 KRT18P14-201ENST00000534205 1250 ntBASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
NKX2-3Q8TAU0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 SMUG1P1-201ENST00000590640 811 ntBASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
NKX2-3Q8TAU0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 AC233723.2-201ENST00000623798 2106 ntBASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
NKX2-3Q8TAU0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 AC080038.1-201ENST00000611274 1154 ntBASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 OXCT2P1-201ENST00000447263 1535 ntBASIC25.67■■□□□ 1.7
NKX2-3Q8TAU0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 AC139530.1-201ENST00000575312 1977 ntBASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 TMEM191A-211ENST00000637163 1067 ntBASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 LINC02228-203ENST00000641970 1355 ntBASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NKX2-3Q8TAU0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 TERF1P2-201ENST00000583350 1212 ntBASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NKX2-3Q8TAU0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NKX2-3Q8TAU0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
NKX2-3Q8TAU0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.64■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms