Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 AC026310.3-201ENST00000625186 2373 ntBASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 MIR3181-201ENST00000578512 73 ntBASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 AL031602.1-201ENST00000633169 911 ntBASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.69■□□□□ 0.9
CLHC1Q8NHS4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 AL512631.2-201ENST00000604634 923 ntBASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLHC1Q8NHS4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 SRD5A1P1-201ENST00000442297 786 ntBASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 AL356441.2-201ENST00000443009 864 ntBASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CLHC1Q8NHS4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLHC1Q8NHS4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.65■□□□□ 0.9
CLHC1Q8NHS4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.64■□□□□ 0.9
CLHC1Q8NHS4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLHC1Q8NHS4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLHC1Q8NHS4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLHC1Q8NHS4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.64■□□□□ 0.89
CLHC1Q8NHS4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms