Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CSMD3Q7Z407 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CSMD3Q7Z407 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 CYP2T1P-201ENST00000432607 1285 ntBASIC15.2■□□□□ 0.02
CSMD3Q7Z407 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CSMD3Q7Z407 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 AC128676.1-201ENST00000454392 318 ntBASIC15.19■□□□□ 0.02
CSMD3Q7Z407 RNA5SP413-201ENST00000516373 109 ntBASIC15.19■□□□□ 0.02
CSMD3Q7Z407 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 ABCB10P4-201ENST00000566803 2184 ntBASIC15.19■□□□□ 0.02
CSMD3Q7Z407 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC15.19■□□□□ 0.02
CSMD3Q7Z407 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC15.18■□□□□ 0.02
CSMD3Q7Z407 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 AC068338.2-201ENST00000563278 1430 ntBASIC15.17■□□□□ 0.02
CSMD3Q7Z407 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 AC009237.3-201ENST00000393279 1427 ntBASIC15.17■□□□□ 0.02
CSMD3Q7Z407 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 PLLP-204ENST00000569059 665 ntTSL 3 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC15.17■□□□□ 0.02
CSMD3Q7Z407 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AC010536.3-201ENST00000620306 533 ntBASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 AC008550.1-201ENST00000511500 884 ntBASIC15.16■□□□□ 0.02
CSMD3Q7Z407 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 UNC93B4-201ENST00000505679 747 ntBASIC15.16■□□□□ 0.02
CSMD3Q7Z407 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CSMD3Q7Z407 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CSMD3Q7Z407 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms