Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CSPG4Q6UVK1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 KRT18P29-201ENST00000397031 1267 ntBASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 MIR1224-201ENST00000408193 85 ntBASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 RPS2P52-201ENST00000469610 820 ntBASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 AP001160.3-201ENST00000601484 763 ntBASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.9■□□□□ 0.46
CSPG4Q6UVK1 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.89■□□□□ 0.46
CSPG4Q6UVK1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.89■□□□□ 0.46
CSPG4Q6UVK1 AC098590.1-201ENST00000468126 897 ntBASIC17.89■□□□□ 0.46
CSPG4Q6UVK1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 LINC01124-201ENST00000409786 2117 ntBASIC17.89■□□□□ 0.45
CSPG4Q6UVK1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 AC013268.1-206ENST00000638368 961 ntBASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 AC112229.1-201ENST00000639295 961 ntBASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 AC083880.1-201ENST00000608266 535 ntBASIC17.88■□□□□ 0.45
CSPG4Q6UVK1 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 MIR4758-201ENST00000577688 71 ntBASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 AC055733.4-201ENST00000638462 1354 ntBASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CSPG4Q6UVK1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 ESRRAP1-201ENST00000400596 1257 ntBASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 AC142381.3-201ENST00000568208 1670 ntBASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 AC068587.7-201ENST00000641602 218 ntBASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CSPG4Q6UVK1 MKRN4P-201ENST00000444706 1521 ntBASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 AL596275.1-201ENST00000423464 877 ntBASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 AC009237.3-201ENST00000393279 1427 ntBASIC17.85■□□□□ 0.45
CSPG4Q6UVK1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms