Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CXCL12P48061 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.73■■□□□ 1.07
CXCL12P48061 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CXCL12P48061 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CXCL12P48061 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CXCL12P48061 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CXCL12P48061 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CXCL12P48061 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CXCL12P48061 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.72■■□□□ 1.07
CXCL12P48061 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CXCL12P48061 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CXCL12P48061 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CXCL12P48061 LINC00543-201ENST00000567234 1845 ntBASIC21.72■■□□□ 1.07
CXCL12P48061 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.72■■□□□ 1.07
CXCL12P48061 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.72■■□□□ 1.07
CXCL12P48061 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.72■■□□□ 1.07
CXCL12P48061 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.72■■□□□ 1.07
CXCL12P48061 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CXCL12P48061 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.72■■□□□ 1.07
CXCL12P48061 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
CXCL12P48061 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CXCL12P48061 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.71■■□□□ 1.07
CXCL12P48061 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CXCL12P48061 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CXCL12P48061 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CXCL12P48061 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CXCL12P48061 MIPEPP3-201ENST00000412105 444 ntBASIC21.71■■□□□ 1.07
CXCL12P48061 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CXCL12P48061 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CXCL12P48061 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.71■■□□□ 1.07
CXCL12P48061 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.71■■□□□ 1.07
CXCL12P48061 MKRN4P-201ENST00000444706 1521 ntBASIC21.7■■□□□ 1.07
CXCL12P48061 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CXCL12P48061 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.7■■□□□ 1.06
CXCL12P48061 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CXCL12P48061 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.7■■□□□ 1.06
CXCL12P48061 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.7■■□□□ 1.06
CXCL12P48061 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.7■■□□□ 1.06
CXCL12P48061 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.7■■□□□ 1.06
CXCL12P48061 TERF1P5-201ENST00000477545 1207 ntBASIC21.7■■□□□ 1.06
CXCL12P48061 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CXCL12P48061 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.7■■□□□ 1.06
CXCL12P48061 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.7■■□□□ 1.06
CXCL12P48061 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CXCL12P48061 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CXCL12P48061 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CXCL12P48061 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CXCL12P48061 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.69■■□□□ 1.06
CXCL12P48061 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CXCL12P48061 PRORSD1P-201ENST00000295112 541 ntBASIC21.69■■□□□ 1.06
CXCL12P48061 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CXCL12P48061 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.69■■□□□ 1.06
CXCL12P48061 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.69■■□□□ 1.06
CXCL12P48061 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.69■■□□□ 1.06
CXCL12P48061 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CXCL12P48061 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.69■■□□□ 1.06
CXCL12P48061 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CXCL12P48061 DUSP8P5-201ENST00000422884 1815 ntBASIC21.69■■□□□ 1.06
CXCL12P48061 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.68■■□□□ 1.06
CXCL12P48061 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.68■■□□□ 1.06
CXCL12P48061 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.68■■□□□ 1.06
CXCL12P48061 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CXCL12P48061 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CXCL12P48061 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.68■■□□□ 1.06
CXCL12P48061 SLC7A5P1-201ENST00000568957 537 ntBASIC21.68■■□□□ 1.06
CXCL12P48061 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.68■■□□□ 1.06
CXCL12P48061 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.68■■□□□ 1.06
CXCL12P48061 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 AC068338.2-201ENST00000563278 1430 ntBASIC21.68■■□□□ 1.06
CXCL12P48061 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
CXCL12P48061 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CXCL12P48061 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.67■■□□□ 1.06
CXCL12P48061 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CXCL12P48061 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CXCL12P48061 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.67■■□□□ 1.06
CXCL12P48061 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CXCL12P48061 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.67■■□□□ 1.06
CXCL12P48061 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CXCL12P48061 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CXCL12P48061 AL139125.2-201ENST00000623134 1869 ntBASIC21.66■■□□□ 1.06
CXCL12P48061 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.66■■□□□ 1.06
CXCL12P48061 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CXCL12P48061 CYP2T1P-201ENST00000432607 1285 ntBASIC21.66■■□□□ 1.06
CXCL12P48061 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.66■■□□□ 1.06
CXCL12P48061 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.66■■□□□ 1.06
CXCL12P48061 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.66■■□□□ 1.06
CXCL12P48061 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms