Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HLA-DMBP28068 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HLA-DMBP28068 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HLA-DMBP28068 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DMBP28068 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 pRNA.6-201ENST00000610482 90 ntBASIC16.4■□□□□ 0.22
HLA-DMBP28068 pRNA.5-201ENST00000612139 90 ntBASIC16.4■□□□□ 0.22
HLA-DMBP28068 pRNA.11-201ENST00000618423 90 ntBASIC16.4■□□□□ 0.22
HLA-DMBP28068 pRNA.13-201ENST00000619112 90 ntBASIC16.4■□□□□ 0.22
HLA-DMBP28068 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DMBP28068 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.4■□□□□ 0.22
HLA-DMBP28068 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.39■□□□□ 0.21
HLA-DMBP28068 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HLA-DMBP28068 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DMBP28068 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HLA-DMBP28068 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 AC099791.2-201ENST00000605725 427 ntBASIC16.39■□□□□ 0.21
HLA-DMBP28068 AC133637.1-201ENST00000624115 1537 ntBASIC16.39■□□□□ 0.21
HLA-DMBP28068 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DMBP28068 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.38■□□□□ 0.21
HLA-DMBP28068 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DMBP28068 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HLA-DMBP28068 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
HLA-DMBP28068 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DMBP28068 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms