Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDH3P22223 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.06■□□□□ 0.96
CDH3P22223 DUSP8P3-201ENST00000399571 1760 ntBASIC21.06■□□□□ 0.96
CDH3P22223 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CDH3P22223 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.06■□□□□ 0.96
CDH3P22223 AC010141.3-201ENST00000456659 717 ntBASIC21.06■□□□□ 0.96
CDH3P22223 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH3P22223 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.06■□□□□ 0.96
CDH3P22223 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.06■□□□□ 0.96
CDH3P22223 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
CDH3P22223 AL031602.1-201ENST00000633169 911 ntBASIC21.06■□□□□ 0.96
CDH3P22223 AC105233.4-201ENST00000642045 216 ntBASIC21.06■□□□□ 0.96
CDH3P22223 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.06■□□□□ 0.96
CDH3P22223 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDH3P22223 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.05■□□□□ 0.96
CDH3P22223 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CDH3P22223 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.05■□□□□ 0.96
CDH3P22223 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.05■□□□□ 0.96
CDH3P22223 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.05■□□□□ 0.96
CDH3P22223 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.05■□□□□ 0.96
CDH3P22223 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.05■□□□□ 0.96
CDH3P22223 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.05■□□□□ 0.96
CDH3P22223 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CDH3P22223 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 EP400NL-214ENST00000641289 2402 ntBASIC21.05■□□□□ 0.96
CDH3P22223 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDH3P22223 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.04■□□□□ 0.96
CDH3P22223 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.04■□□□□ 0.96
CDH3P22223 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.04■□□□□ 0.96
CDH3P22223 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CDH3P22223 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
CDH3P22223 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.04■□□□□ 0.96
CDH3P22223 AC087623.3-201ENST00000607047 1098 ntBASIC21.04■□□□□ 0.96
CDH3P22223 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CDH3P22223 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CDH3P22223 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDH3P22223 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CDH3P22223 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CDH3P22223 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 YBX1P1-201ENST00000445822 960 ntBASIC21.03■□□□□ 0.96
CDH3P22223 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.03■□□□□ 0.96
CDH3P22223 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.03■□□□□ 0.96
CDH3P22223 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.03■□□□□ 0.96
CDH3P22223 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 PKD1P6-201ENST00000343738 4769 ntBASIC21.03■□□□□ 0.96
CDH3P22223 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDH3P22223 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CDH3P22223 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CDH3P22223 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH3P22223 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH3P22223 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.02■□□□□ 0.96
CDH3P22223 AC027612.3-201ENST00000413684 1047 ntBASIC21.02■□□□□ 0.96
CDH3P22223 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.02■□□□□ 0.96
CDH3P22223 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.02■□□□□ 0.96
CDH3P22223 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH3P22223 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDH3P22223 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.02■□□□□ 0.96
CDH3P22223 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CDH3P22223 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.01■□□□□ 0.95
CDH3P22223 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDH3P22223 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CDH3P22223 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms