Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH3P20585 AC137767.1-201ENST00000602918 1920 ntBASIC21.48■■□□□ 1.03
MSH3P20585 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
MSH3P20585 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH3P20585 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH3P20585 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 IRS3P-201ENST00000223076 1006 ntBASIC21.47■■□□□ 1.03
MSH3P20585 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 MIR572-201ENST00000384983 95 ntBASIC21.47■■□□□ 1.03
MSH3P20585 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH3P20585 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.47■■□□□ 1.03
MSH3P20585 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH3P20585 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
MSH3P20585 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH3P20585 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH3P20585 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH3P20585 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH3P20585 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH3P20585 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH3P20585 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.46■■□□□ 1.03
MSH3P20585 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.46■■□□□ 1.03
MSH3P20585 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH3P20585 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.45■■□□□ 1.02
MSH3P20585 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.45■■□□□ 1.02
MSH3P20585 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH3P20585 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 AC105233.4-201ENST00000642045 216 ntBASIC21.45■■□□□ 1.02
MSH3P20585 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH3P20585 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH3P20585 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.44■■□□□ 1.02
MSH3P20585 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH3P20585 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
MSH3P20585 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH3P20585 ZNRF2P3-201ENST00000424200 374 ntBASIC21.44■■□□□ 1.02
MSH3P20585 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
MSH3P20585 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH3P20585 AC139530.1-201ENST00000575312 1977 ntBASIC21.44■■□□□ 1.02
MSH3P20585 OR7E47P-201ENST00000546390 1422 ntBASIC21.44■■□□□ 1.02
MSH3P20585 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH3P20585 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH3P20585 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
MSH3P20585 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH3P20585 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH3P20585 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.43■■□□□ 1.02
MSH3P20585 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH3P20585 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH3P20585 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH3P20585 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH3P20585 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH3P20585 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH3P20585 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH3P20585 AC080038.3-201ENST00000623346 1952 ntBASIC21.42■■□□□ 1.02
MSH3P20585 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH3P20585 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
MSH3P20585 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH3P20585 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH3P20585 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
MSH3P20585 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.41■■□□□ 1.02
MSH3P20585 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH3P20585 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms