Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL4A1P02462 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL4A1P02462 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL4A1P02462 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
COL4A1P02462 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.75■■□□□ 1.87
COL4A1P02462 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL4A1P02462 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL4A1P02462 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
COL4A1P02462 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
COL4A1P02462 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL4A1P02462 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.74■■□□□ 1.87
COL4A1P02462 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.74■■□□□ 1.87
COL4A1P02462 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL4A1P02462 LINC00526-201ENST00000581067 1875 ntBASIC26.74■■□□□ 1.87
COL4A1P02462 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL4A1P02462 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL4A1P02462 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
COL4A1P02462 METTL15-202ENST00000403099 795 ntTSL 5 BASIC26.73■■□□□ 1.87
COL4A1P02462 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
COL4A1P02462 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
COL4A1P02462 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL4A1P02462 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL4A1P02462 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL4A1P02462 MYCNOS-205ENST00000641950 531 ntBASIC26.73■■□□□ 1.87
COL4A1P02462 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.72■■□□□ 1.87
COL4A1P02462 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 AC009237.3-201ENST00000393279 1427 ntBASIC26.72■■□□□ 1.87
COL4A1P02462 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.72■■□□□ 1.87
COL4A1P02462 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC26.72■■□□□ 1.87
COL4A1P02462 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.72■■□□□ 1.87
COL4A1P02462 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL4A1P02462 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.71■■□□□ 1.87
COL4A1P02462 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.71■■□□□ 1.87
COL4A1P02462 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC26.71■■□□□ 1.87
COL4A1P02462 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC26.71■■□□□ 1.87
COL4A1P02462 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC26.71■■□□□ 1.87
COL4A1P02462 TFG-210ENST00000620299 1289 ntTSL 5 BASIC26.71■■□□□ 1.87
COL4A1P02462 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL4A1P02462 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL4A1P02462 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL4A1P02462 PARP1-202ENST00000366792 553 ntTSL 3 BASIC26.7■■□□□ 1.87
COL4A1P02462 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.7■■□□□ 1.87
COL4A1P02462 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
COL4A1P02462 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.7■■□□□ 1.86
COL4A1P02462 KRT18P11-201ENST00000435214 1283 ntBASIC26.7■■□□□ 1.86
COL4A1P02462 SERP1-208ENST00000491660 830 ntTSL 2 BASIC26.7■■□□□ 1.86
COL4A1P02462 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC26.7■■□□□ 1.86
COL4A1P02462 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC26.7■■□□□ 1.86
COL4A1P02462 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.69■■□□□ 1.86
COL4A1P02462 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL4A1P02462 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL4A1P02462 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL4A1P02462 AC079089.2-201ENST00000531211 1277 ntBASIC26.69■■□□□ 1.86
COL4A1P02462 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC26.69■■□□□ 1.86
COL4A1P02462 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL4A1P02462 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.68■■□□□ 1.86
COL4A1P02462 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL4A1P02462 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL4A1P02462 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL4A1P02462 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL4A1P02462 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC26.67■■□□□ 1.86
COL4A1P02462 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.67■■□□□ 1.86
COL4A1P02462 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC26.67■■□□□ 1.86
COL4A1P02462 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC26.67■■□□□ 1.86
COL4A1P02462 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL4A1P02462 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.67■■□□□ 1.86
COL4A1P02462 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
COL4A1P02462 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
COL4A1P02462 AC142086.2-201ENST00000569753 217 ntBASIC26.66■■□□□ 1.86
COL4A1P02462 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
COL4A1P02462 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.66■■□□□ 1.86
COL4A1P02462 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
COL4A1P02462 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL4A1P02462 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC26.66■■□□□ 1.86
COL4A1P02462 AC010141.2-201ENST00000452426 721 ntBASIC26.66■■□□□ 1.86
COL4A1P02462 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.66■■□□□ 1.86
COL4A1P02462 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.66■■□□□ 1.86
COL4A1P02462 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL4A1P02462 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.65■■□□□ 1.86
COL4A1P02462 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL4A1P02462 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.65■■□□□ 1.86
COL4A1P02462 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.65■■□□□ 1.86
COL4A1P02462 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC26.65■■□□□ 1.86
COL4A1P02462 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC26.65■■□□□ 1.86
COL4A1P02462 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms