Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TNFP01375 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.16■□□□□ 0.98
TNFP01375 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.16■□□□□ 0.98
TNFP01375 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TNFP01375 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TNFP01375 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFP01375 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFP01375 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.16■□□□□ 0.98
TNFP01375 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.16■□□□□ 0.98
TNFP01375 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.16■□□□□ 0.98
TNFP01375 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.16■□□□□ 0.98
TNFP01375 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TNFP01375 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.16■□□□□ 0.98
TNFP01375 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TNFP01375 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.16■□□□□ 0.98
TNFP01375 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TNFP01375 KRT87P-202ENST00000534226 1464 ntBASIC21.15■□□□□ 0.98
TNFP01375 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFP01375 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFP01375 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFP01375 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFP01375 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFP01375 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFP01375 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFP01375 AL034346.1-201ENST00000568244 1277 ntBASIC21.15■□□□□ 0.98
TNFP01375 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFP01375 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFP01375 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFP01375 ESRRAP2-201ENST00000418437 1549 ntBASIC21.14■□□□□ 0.98
TNFP01375 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.14■□□□□ 0.98
TNFP01375 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TNFP01375 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.14■□□□□ 0.98
TNFP01375 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
TNFP01375 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.14■□□□□ 0.97
TNFP01375 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.14■□□□□ 0.97
TNFP01375 AC080038.1-201ENST00000611274 1154 ntBASIC21.14■□□□□ 0.97
TNFP01375 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.14■□□□□ 0.97
TNFP01375 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TNFP01375 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFP01375 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.14■□□□□ 0.97
TNFP01375 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.14■□□□□ 0.97
TNFP01375 LINC00526-201ENST00000581067 1875 ntBASIC21.13■□□□□ 0.97
TNFP01375 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.13■□□□□ 0.97
TNFP01375 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.13■□□□□ 0.97
TNFP01375 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TNFP01375 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.12■□□□□ 0.97
TNFP01375 KRT18P11-201ENST00000435214 1283 ntBASIC21.12■□□□□ 0.97
TNFP01375 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
TNFP01375 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.12■□□□□ 0.97
TNFP01375 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TNFP01375 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TNFP01375 AC055733.4-201ENST00000638462 1354 ntBASIC21.11■□□□□ 0.97
TNFP01375 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 DUSP8P5-201ENST00000422884 1815 ntBASIC21.11■□□□□ 0.97
TNFP01375 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFP01375 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 AC104187.1-201ENST00000607510 612 ntBASIC21.11■□□□□ 0.97
TNFP01375 BID-214ENST00000617586 542 ntTSL 5 BASIC21.11■□□□□ 0.97
TNFP01375 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.11■□□□□ 0.97
TNFP01375 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TNFP01375 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TNFP01375 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFP01375 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.1■□□□□ 0.97
TNFP01375 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.1■□□□□ 0.97
TNFP01375 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TNFP01375 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.1■□□□□ 0.97
TNFP01375 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.1■□□□□ 0.97
TNFP01375 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.1■□□□□ 0.97
TNFP01375 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms