Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.5■□□□□ 0.55
XRCC3O43542 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.5■□□□□ 0.55
XRCC3O43542 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
XRCC3O43542 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
XRCC3O43542 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC3O43542 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.5■□□□□ 0.55
XRCC3O43542 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
XRCC3O43542 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
XRCC3O43542 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC3O43542 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC3O43542 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.49■□□□□ 0.55
XRCC3O43542 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC3O43542 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC3O43542 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC3O43542 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
XRCC3O43542 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC3O43542 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.48■□□□□ 0.55
XRCC3O43542 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC3O43542 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.48■□□□□ 0.55
XRCC3O43542 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC3O43542 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC3O43542 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
XRCC3O43542 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
XRCC3O43542 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.47■□□□□ 0.55
XRCC3O43542 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 RARRES2P2-201ENST00000394842 485 ntBASIC18.47■□□□□ 0.55
XRCC3O43542 DUX4L18-201ENST00000553347 1267 ntBASIC18.47■□□□□ 0.55
XRCC3O43542 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.47■□□□□ 0.55
XRCC3O43542 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC3O43542 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC3O43542 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.47■□□□□ 0.55
XRCC3O43542 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 AC005703.6-201ENST00000623265 1329 ntBASIC18.47■□□□□ 0.55
XRCC3O43542 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
XRCC3O43542 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC3O43542 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
XRCC3O43542 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC3O43542 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.46■□□□□ 0.55
XRCC3O43542 AC074183.2-201ENST00000623112 922 ntBASIC18.46■□□□□ 0.55
XRCC3O43542 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.46■□□□□ 0.55
XRCC3O43542 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.46■□□□□ 0.55
XRCC3O43542 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
XRCC3O43542 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.46■□□□□ 0.54
XRCC3O43542 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
XRCC3O43542 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC3O43542 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.45■□□□□ 0.54
XRCC3O43542 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.45■□□□□ 0.54
XRCC3O43542 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
XRCC3O43542 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
XRCC3O43542 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
XRCC3O43542 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.45■□□□□ 0.54
XRCC3O43542 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.45■□□□□ 0.54
XRCC3O43542 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.45■□□□□ 0.54
XRCC3O43542 BHLHE23-202ENST00000612929 1109 ntBASIC18.45■□□□□ 0.54
XRCC3O43542 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
XRCC3O43542 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
XRCC3O43542 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms