Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
TRAV1-2A0A0B4J238 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 AC092667.1-201ENST00000434301 2586 ntBASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-2A0A0B4J238 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-2A0A0B4J238 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 AC104564.3-201ENST00000582367 638 ntBASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV1-2A0A0B4J238 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRAV1-2A0A0B4J238 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV1-2A0A0B4J238 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV1-2A0A0B4J238 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV1-2A0A0B4J238 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
TRAV1-2A0A0B4J238 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-2A0A0B4J238 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
TRAV1-2A0A0B4J238 OXCT2P1-201ENST00000447263 1535 ntBASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV1-2A0A0B4J238 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms