Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 UBA4YHR111W 1323 nt9.62□□□□□ -0.87
UPF3P48412 SSN3YPL042C 1668 nt9.62□□□□□ -0.87
UPF3P48412 RET2YFR051C 1641 nt9.6□□□□□ -0.87
UPF3P48412 PRM5YIL117C 957 nt9.6□□□□□ -0.87
UPF3P48412 SHH4YLR164W 507 nt9.6□□□□□ -0.87
UPF3P48412 ALD4YOR374W 1560 nt9.59□□□□□ -0.87
UPF3P48412 GAP1YKR039W 1809 nt9.59□□□□□ -0.87
UPF3P48412 POM34YLR018C 900 nt9.58□□□□□ -0.88
UPF3P48412 UTR1YJR049C 1593 nt9.58□□□□□ -0.88
UPF3P48412 PRO1YDR300C 1287 nt9.57□□□□□ -0.88
UPF3P48412 HIF1YLL022C 1158 nt9.57□□□□□ -0.88
UPF3P48412 YML089CYML089C 369 nt9.56□□□□□ -0.88
UPF3P48412 HSL7YBR133C 2484 nt9.56□□□□□ -0.88
UPF3P48412 SFA1YDL168W 1161 nt9.55□□□□□ -0.88
UPF3P48412 SAM35YHR083W 990 nt9.52□□□□□ -0.89
UPF3P48412 YHL019W-AYHL019W-A 594 nt9.51□□□□□ -0.89
UPF3P48412 YSR3YKR053C 1215 nt9.51□□□□□ -0.89
UPF3P48412 ATG15YCR068W 1563 nt9.5□□□□□ -0.89
UPF3P48412 RDN25-1RDN25-1 3396 nt9.5□□□□□ -0.89
UPF3P48412 RDN25-2RDN25-2 3396 nt9.5□□□□□ -0.89
UPF3P48412 YGL034CYGL034C 366 nt9.5□□□□□ -0.89
UPF3P48412 PHO89YBR296C 1725 nt9.5□□□□□ -0.89
UPF3P48412 YAT1YAR035W 2064 nt9.47□□□□□ -0.89
UPF3P48412 XYL2YLR070C 1071 nt9.46□□□□□ -0.9
UPF3P48412 TOM6YOR045W 186 nt9.46□□□□□ -0.9
UPF3P48412 YCR087WYCR087W 516 nt9.45□□□□□ -0.9
UPF3P48412 DIF1YLR437C 402 nt9.45□□□□□ -0.9
UPF3P48412 COQ2YNR041C 1119 nt9.45□□□□□ -0.9
UPF3P48412 NDI1YML120C 1542 nt9.44□□□□□ -0.9
UPF3P48412 CMP2YML057W 1815 nt9.42□□□□□ -0.9
UPF3P48412 AIM45YPR004C 1035 nt9.41□□□□□ -0.9
UPF3P48412 TIF6YPR016C 738 nt9.41□□□□□ -0.9
UPF3P48412 ZRT3YKL175W 1512 nt9.41□□□□□ -0.9
UPF3P48412 YDR510C-AYDR510C-A 117 nt9.39□□□□□ -0.91
UPF3P48412 SBA1YKL117W 651 nt9.39□□□□□ -0.91
UPF3P48412 HIP1YGR191W 1812 nt9.38□□□□□ -0.91
UPF3P48412 MRP20YDR405W 792 nt9.37□□□□□ -0.91
UPF3P48412 PEX2YJL210W 816 nt9.37□□□□□ -0.91
UPF3P48412 INA1YLR413W 2028 nt9.37□□□□□ -0.91
UPF3P48412 DBP1YPL119C 1854 nt9.36□□□□□ -0.91
UPF3P48412 HEL2YDR266C 1920 nt9.36□□□□□ -0.91
UPF3P48412 MET28YIR017C 564 nt9.34□□□□□ -0.91
UPF3P48412 HXT1YHR094C 1713 nt9.34□□□□□ -0.92
UPF3P48412 SPT20YOL148C 1815 nt9.33□□□□□ -0.92
UPF3P48412 YAR028WYAR028W 705 nt9.33□□□□□ -0.92
UPF3P48412 RPL4BYDR012W 1089 nt9.32□□□□□ -0.92
UPF3P48412 RBG1YAL036C 1110 nt9.32□□□□□ -0.92
UPF3P48412 RPL4AYBR031W 1089 nt9.32□□□□□ -0.92
UPF3P48412 RPC82YPR190C 1965 nt9.31□□□□□ -0.92
UPF3P48412 MCM5YLR274W 2328 nt9.31□□□□□ -0.92
UPF3P48412 RPS14BYJL191W 417 nt9.3□□□□□ -0.92
UPF3P48412 UTH1YKR042W 1098 nt9.29□□□□□ -0.92
UPF3P48412 CLB6YGR109C 1143 nt9.28□□□□□ -0.92
UPF3P48412 NRT1YOR071C 1797 nt9.27□□□□□ -0.92
UPF3P48412 SED1YDR077W 1017 nt9.27□□□□□ -0.93
UPF3P48412 SHY1YGR112W 1170 nt9.27□□□□□ -0.93
UPF3P48412 YJL067WYJL067W 351 nt9.27□□□□□ -0.93
UPF3P48412 LIP1YMR298W 453 nt9.26□□□□□ -0.93
UPF3P48412 MTG2YHR168W 1557 nt9.24□□□□□ -0.93
UPF3P48412 YBL086CYBL086C 1401 nt9.24□□□□□ -0.93
UPF3P48412 FIT3YOR383C 615 nt9.24□□□□□ -0.93
UPF3P48412 SFP1YLR403W 2052 nt9.24□□□□□ -0.93
UPF3P48412 MET2YNL277W 1461 nt9.22□□□□□ -0.93
UPF3P48412 YMR244WYMR244W 1068 nt9.22□□□□□ -0.93
UPF3P48412 GLR1YPL091W 1452 nt9.21□□□□□ -0.93
UPF3P48412 YER190C-AYER190C-A 576 nt9.21□□□□□ -0.94
UPF3P48412 YGR296C-AYGR296C-A 576 nt9.21□□□□□ -0.94
UPF3P48412 YML133W-AYML133W-A 576 nt9.21□□□□□ -0.94
UPF3P48412 YNL339W-AYNL339W-A 576 nt9.21□□□□□ -0.94
UPF3P48412 YPL283W-AYPL283W-A 576 nt9.21□□□□□ -0.94
UPF3P48412 ALP1YNL270C 1722 nt9.21□□□□□ -0.94
UPF3P48412 MAS1YLR163C 1389 nt9.21□□□□□ -0.94
UPF3P48412 Q0010Q0010 387 nt9.2□□□□□ -0.94
UPF3P48412 AKR2YOR034C 2250 nt9.2□□□□□ -0.94
UPF3P48412 NPP1YCR026C 2229 nt9.19□□□□□ -0.94
UPF3P48412 GID7YCL039W 2238 nt9.19□□□□□ -0.94
UPF3P48412 URA6YKL024C 615 nt9.19□□□□□ -0.94
UPF3P48412 LEU9YOR108W 1815 nt9.18□□□□□ -0.94
UPF3P48412 ZTA1YBR046C 1005 nt9.17□□□□□ -0.94
UPF3P48412 SAM1YLR180W 1149 nt9.15□□□□□ -0.94
UPF3P48412 TSC10YBR265W 963 nt9.15□□□□□ -0.94
UPF3P48412 UFO1YML088W 2007 nt9.15□□□□□ -0.94
UPF3P48412 ESBP6YNL125C 2022 nt9.13□□□□□ -0.95
UPF3P48412 YLR279WYLR279W 390 nt9.12□□□□□ -0.95
UPF3P48412 YPL251WYPL251W 303 nt9.12□□□□□ -0.95
UPF3P48412 BRR1YPR057W 1026 nt9.12□□□□□ -0.95
UPF3P48412 TOA2YKL058W 369 nt9.1□□□□□ -0.95
UPF3P48412 ILV3YJR016C 1758 nt9.09□□□□□ -0.95
UPF3P48412 RAD23YEL037C 1197 nt9.09□□□□□ -0.95
UPF3P48412 YGR012WYGR012W 1182 nt9.09□□□□□ -0.95
UPF3P48412 OYE3YPL171C 1203 nt9.08□□□□□ -0.96
UPF3P48412 CAB5YDR196C 726 nt9.07□□□□□ -0.96
UPF3P48412 YMR226CYMR226C 804 nt9.07□□□□□ -0.96
UPF3P48412 PET8YNL003C 855 nt9.07□□□□□ -0.96
UPF3P48412 RFC1YOR217W 2586 nt9.06□□□□□ -0.96
UPF3P48412 TRT2tT(CGU)K 72 nt9.06□□□□□ -0.96
UPF3P48412 YIL100C-AYIL100C-A 339 nt9.06□□□□□ -0.96
UPF3P48412 MSB4YOL112W 1479 nt9.06□□□□□ -0.96
UPF3P48412 GND2YGR256W 1479 nt9.04□□□□□ -0.96
UPF3P48412 CWC15YDR163W 528 nt9.04□□□□□ -0.96
Retrieved 100 of 7,029 protein–RNA pairs in 13.4 ms