Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PCDHA9Q9Y5H5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 pRNA.6-201ENST00000610482 90 ntBASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 pRNA.5-201ENST00000612139 90 ntBASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 pRNA.11-201ENST00000618423 90 ntBASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 pRNA.13-201ENST00000619112 90 ntBASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHA9Q9Y5H5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHA9Q9Y5H5 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 AC131212.1-201ENST00000613771 668 ntBASIC20.83■□□□□ 0.93
PCDHA9Q9Y5H5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.83■□□□□ 0.92
PCDHA9Q9Y5H5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHA9Q9Y5H5 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHA9Q9Y5H5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 MIR3181-201ENST00000578512 73 ntBASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 AC133637.1-201ENST00000624115 1537 ntBASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PCDHA9Q9Y5H5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHA9Q9Y5H5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 LINC01960-201ENST00000563759 1884 ntBASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHA9Q9Y5H5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHA9Q9Y5H5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms