Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHB3Q9Y5E6 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 AC079630.1-202ENST00000618127 1840 ntBASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 AC007375.3-201ENST00000600936 2314 ntBASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHB3Q9Y5E6 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDHB3Q9Y5E6 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
PCDHB3Q9Y5E6 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
PCDHB3Q9Y5E6 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHB3Q9Y5E6 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 OR2I1P-207ENST00000453522 948 ntBASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.14■□□□□ 0.97
PCDHB3Q9Y5E6 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHB3Q9Y5E6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 AC034268.1-201ENST00000441047 882 ntBASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHB3Q9Y5E6 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 IGHV3-19-201ENST00000521488 291 ntBASIC21.11■□□□□ 0.97
PCDHB3Q9Y5E6 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms