Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88CQ9P219 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 AC123595.1-201ENST00000440769 1046 ntBASIC20.7■□□□□ 0.9
CCDC88CQ9P219 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 CLDN5-201ENST00000403084 2357 ntBASIC20.7■□□□□ 0.9
CCDC88CQ9P219 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 MIR6084-201ENST00000622012 110 ntBASIC20.7■□□□□ 0.9
CCDC88CQ9P219 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88CQ9P219 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 AL353803.4-201ENST00000565882 1934 ntBASIC20.69■□□□□ 0.9
CCDC88CQ9P219 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.69■□□□□ 0.9
CCDC88CQ9P219 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88CQ9P219 AL354811.1-201ENST00000610286 706 ntBASIC20.68■□□□□ 0.9
CCDC88CQ9P219 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC88CQ9P219 CCDC92B-201ENST00000575506 885 ntBASIC20.68■□□□□ 0.9
CCDC88CQ9P219 AC127496.7-201ENST00000625110 1798 ntBASIC20.67■□□□□ 0.9
CCDC88CQ9P219 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC88CQ9P219 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 AC087239.1-201ENST00000622671 572 ntBASIC20.66■□□□□ 0.9
CCDC88CQ9P219 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 AC139530.1-201ENST00000575312 1977 ntBASIC20.66■□□□□ 0.9
CCDC88CQ9P219 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC88CQ9P219 LINC00526-201ENST00000581067 1875 ntBASIC20.65■□□□□ 0.9
CCDC88CQ9P219 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88CQ9P219 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC88CQ9P219 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC88CQ9P219 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC88CQ9P219 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms