Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.84■□□□□ 0.77
EXOSC3Q9NQT5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 OXCT2P1-201ENST00000447263 1535 ntBASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.83■□□□□ 0.77
EXOSC3Q9NQT5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
EXOSC3Q9NQT5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
EXOSC3Q9NQT5 C11orf96-202ENST00000528572 1834 ntBASIC19.83■□□□□ 0.76
EXOSC3Q9NQT5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
EXOSC3Q9NQT5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.83■□□□□ 0.76
EXOSC3Q9NQT5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 AC096631.2-201ENST00000436136 790 ntBASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
EXOSC3Q9NQT5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 AC233992.3-201ENST00000607491 485 ntBASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.81■□□□□ 0.76
EXOSC3Q9NQT5 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 OR7E47P-201ENST00000546390 1422 ntBASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 AC106739.1-201ENST00000617035 715 ntBASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
EXOSC3Q9NQT5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EXOSC3Q9NQT5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
EXOSC3Q9NQT5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 EDA-201ENST00000338901 1233 ntBASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 PBX2P1-201ENST00000493219 1291 ntBASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.77■□□□□ 0.76
EXOSC3Q9NQT5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms