Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM3Q8TF72 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 MIR939-201ENST00000401314 82 ntBASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 CA15P2-201ENST00000611168 834 ntBASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 AC027682.1-201ENST00000562846 899 ntBASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM3Q8TF72 RASA4CP-201ENST00000424092 1398 ntBASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 FAM99A-202ENST00000538190 1989 ntBASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 IGHV3-19-201ENST00000521488 291 ntBASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 MIR6821-201ENST00000617625 74 ntBASIC22.18■■□□□ 1.14
SHROOM3Q8TF72 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM3Q8TF72 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 LINC00565-201ENST00000562710 2331 ntBASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 OR7E47P-201ENST00000546390 1422 ntBASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 AC079089.2-201ENST00000531211 1277 ntBASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM3Q8TF72 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM3Q8TF72 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SHROOM3Q8TF72 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.14
SHROOM3Q8TF72 AC012414.1-201ENST00000556676 535 ntBASIC22.14■■□□□ 1.14
SHROOM3Q8TF72 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.14■■□□□ 1.14
SHROOM3Q8TF72 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 AC010542.4-201ENST00000563151 1910 ntBASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 TSPY26P-201ENST00000476365 1326 ntBASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.14■■□□□ 1.13
SHROOM3Q8TF72 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms