Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
USP48Q86UV5 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP48Q86UV5 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP48Q86UV5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC26.58■■□□□ 1.85
USP48Q86UV5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 TPRG1LP1-201ENST00000598702 760 ntBASIC26.58■■□□□ 1.85
USP48Q86UV5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC26.58■■□□□ 1.85
USP48Q86UV5 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP48Q86UV5 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
USP48Q86UV5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
USP48Q86UV5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.57■■□□□ 1.84
USP48Q86UV5 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP48Q86UV5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC26.57■■□□□ 1.84
USP48Q86UV5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
USP48Q86UV5 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.57■■□□□ 1.84
USP48Q86UV5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP48Q86UV5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP48Q86UV5 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.56■■□□□ 1.84
USP48Q86UV5 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.56■■□□□ 1.84
USP48Q86UV5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC26.56■■□□□ 1.84
USP48Q86UV5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.56■■□□□ 1.84
USP48Q86UV5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC26.56■■□□□ 1.84
USP48Q86UV5 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP48Q86UV5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
USP48Q86UV5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP48Q86UV5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC26.55■■□□□ 1.84
USP48Q86UV5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP48Q86UV5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP48Q86UV5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP48Q86UV5 CD99P1-205ENST00000527459 561 ntBASIC26.55■■□□□ 1.84
USP48Q86UV5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC26.55■■□□□ 1.84
USP48Q86UV5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP48Q86UV5 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.54■■□□□ 1.84
USP48Q86UV5 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
USP48Q86UV5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC26.54■■□□□ 1.84
USP48Q86UV5 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP48Q86UV5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC26.53■■□□□ 1.84
USP48Q86UV5 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
USP48Q86UV5 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.53■■□□□ 1.84
USP48Q86UV5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.53■■□□□ 1.84
USP48Q86UV5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC26.53■■□□□ 1.84
USP48Q86UV5 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC26.53■■□□□ 1.84
USP48Q86UV5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
USP48Q86UV5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
USP48Q86UV5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC26.53■■□□□ 1.84
USP48Q86UV5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP48Q86UV5 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP48Q86UV5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP48Q86UV5 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP48Q86UV5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP48Q86UV5 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.52■■□□□ 1.84
USP48Q86UV5 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC26.52■■□□□ 1.84
USP48Q86UV5 TSPY20P-201ENST00000450910 630 ntBASIC26.52■■□□□ 1.84
USP48Q86UV5 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC26.52■■□□□ 1.84
USP48Q86UV5 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP48Q86UV5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.52■■□□□ 1.84
USP48Q86UV5 DUX4L4-201ENST00000566884 1269 ntBASIC26.52■■□□□ 1.84
USP48Q86UV5 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC26.51■■□□□ 1.84
USP48Q86UV5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.51■■□□□ 1.84
USP48Q86UV5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.51■■□□□ 1.83
USP48Q86UV5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.51■■□□□ 1.83
USP48Q86UV5 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
USP48Q86UV5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
USP48Q86UV5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 AC011767.1-201ENST00000617410 1153 ntBASIC26.51■■□□□ 1.83
USP48Q86UV5 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP48Q86UV5 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.51■■□□□ 1.83
USP48Q86UV5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms