Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 AC080038.1-201ENST00000611274 1154 ntBASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 AC127496.7-201ENST00000625110 1798 ntBASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 LINC02228-203ENST00000641970 1355 ntBASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 LINC00526-201ENST00000581067 1875 ntBASIC24.92■■□□□ 1.58
SH3RF1Q7Z6J0 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SH3RF1Q7Z6J0 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 LINC01529-204ENST00000636474 1715 ntBASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 RAP2CP1-201ENST00000605103 478 ntBASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SH3RF1Q7Z6J0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 KRT18P61-201ENST00000585825 1298 ntBASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SH3RF1Q7Z6J0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
SH3RF1Q7Z6J0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
SH3RF1Q7Z6J0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.89■■□□□ 1.57
SH3RF1Q7Z6J0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
SH3RF1Q7Z6J0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
SH3RF1Q7Z6J0 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SH3RF1Q7Z6J0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 AC087742.1-201ENST00000575880 1738 ntBASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 DUX4L4-201ENST00000566884 1269 ntBASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
SH3RF1Q7Z6J0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 ABHD17AP1-201ENST00000358206 933 ntBASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 CDCA4P2-201ENST00000441182 718 ntBASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 AC010525.1-201ENST00000585559 441 ntBASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.86■■□□□ 1.57
SH3RF1Q7Z6J0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms