Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ABCB10P4-201ENST00000566803 2184 ntBASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 MYCNOS-205ENST00000641950 531 ntBASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 AC079140.4-201ENST00000507448 529 ntBASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 AC133552.2-202ENST00000575694 574 ntBASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CSPG4Q6UVK1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 RNA5SP413-201ENST00000516373 109 ntBASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 AC133041.1-202ENST00000642053 222 ntBASIC17.97■□□□□ 0.47
CSPG4Q6UVK1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 LINC00543-201ENST00000567234 1845 ntBASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 SLC7A5P1-201ENST00000568957 537 ntBASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 AC079630.1-202ENST00000618127 1840 ntBASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CSPG4Q6UVK1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CSPG4Q6UVK1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
CSPG4Q6UVK1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 AC105036.2-201ENST00000569468 176 ntBASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CSPG4Q6UVK1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CSPG4Q6UVK1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 GCSHP5-201ENST00000443090 522 ntBASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 AC005224.4-201ENST00000583262 1652 ntBASIC17.92■□□□□ 0.46
CSPG4Q6UVK1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms