Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 AC131281.2-201ENST00000520478 145 ntBASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 AL031602.1-201ENST00000633169 911 ntBASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
CCDC40Q4G0X9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.83■■□□□ 1.4
CCDC40Q4G0X9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC40Q4G0X9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
CCDC40Q4G0X9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 SYT6-210ENST00000641643 1587 ntBASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC40Q4G0X9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 SERBP1P1-201ENST00000396021 1160 ntBASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 OR2I1P-207ENST00000453522 948 ntBASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC40Q4G0X9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 FBXW4P1-201ENST00000426721 2239 ntBASIC23.78■■□□□ 1.4
CCDC40Q4G0X9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 DUX4L19-201ENST00000557448 1267 ntBASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC40Q4G0X9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC40Q4G0X9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms