Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
CCDC144BQ3MJ40 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC25.18■■□□□ 1.62
CCDC144BQ3MJ40 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC144BQ3MJ40 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 AC004911.1-201ENST00000416316 871 ntBASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 KRT18P14-201ENST00000534205 1250 ntBASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 TERF1P2-201ENST00000583350 1212 ntBASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 NTF6G-201ENST00000591094 616 ntBASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 AC007375.3-201ENST00000600936 2314 ntBASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC144BQ3MJ40 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 GXYLT1P2-201ENST00000433312 1230 ntBASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC144BQ3MJ40 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 AP005435.1-201ENST00000529293 1178 ntBASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.14■■□□□ 1.62
CCDC144BQ3MJ40 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 AC144652.1-201ENST00000609974 1624 ntBASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 LINC02228-203ENST00000641970 1355 ntBASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 LINC01529-204ENST00000636474 1715 ntBASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.14■■□□□ 1.61
CCDC144BQ3MJ40 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 ECEL1P1-201ENST00000373592 1742 ntBASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC144BQ3MJ40 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC144BQ3MJ40 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms