Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.2■■□□□ 1.46
NKX3-2P78367 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
NKX3-2P78367 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NKX3-2P78367 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
NKX3-2P78367 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
NKX3-2P78367 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NKX3-2P78367 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.18■■□□□ 1.46
NKX3-2P78367 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.18■■□□□ 1.46
NKX3-2P78367 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 AC073210.2-201ENST00000430369 194 ntBASIC24.18■■□□□ 1.46
NKX3-2P78367 CNN2P6-201ENST00000439038 900 ntBASIC24.18■■□□□ 1.46
NKX3-2P78367 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.18■■□□□ 1.46
NKX3-2P78367 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.18■■□□□ 1.46
NKX3-2P78367 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.18■■□□□ 1.46
NKX3-2P78367 KRT18P20-201ENST00000548986 1279 ntBASIC24.18■■□□□ 1.46
NKX3-2P78367 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.18■■□□□ 1.46
NKX3-2P78367 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
NKX3-2P78367 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.18■■□□□ 1.46
NKX3-2P78367 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NKX3-2P78367 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NKX3-2P78367 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
NKX3-2P78367 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.17■■□□□ 1.46
NKX3-2P78367 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NKX3-2P78367 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.17■■□□□ 1.46
NKX3-2P78367 KRT18P6-201ENST00000555540 1265 ntBASIC24.17■■□□□ 1.46
NKX3-2P78367 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.17■■□□□ 1.46
NKX3-2P78367 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
NKX3-2P78367 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
NKX3-2P78367 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.16■■□□□ 1.46
NKX3-2P78367 AC138907.5-202ENST00000569484 235 ntBASIC24.16■■□□□ 1.46
NKX3-2P78367 AC133552.2-202ENST00000575694 574 ntBASIC24.16■■□□□ 1.46
NKX3-2P78367 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
NKX3-2P78367 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
NKX3-2P78367 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
NKX3-2P78367 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
NKX3-2P78367 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
NKX3-2P78367 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.15■■□□□ 1.46
NKX3-2P78367 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
NKX3-2P78367 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.15■■□□□ 1.46
NKX3-2P78367 AC010141.2-201ENST00000452426 721 ntBASIC24.15■■□□□ 1.46
NKX3-2P78367 AC079089.2-201ENST00000531211 1277 ntBASIC24.15■■□□□ 1.46
NKX3-2P78367 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
NKX3-2P78367 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
NKX3-2P78367 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.15■■□□□ 1.46
NKX3-2P78367 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
NKX3-2P78367 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
NKX3-2P78367 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
NKX3-2P78367 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.14■■□□□ 1.46
NKX3-2P78367 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
NKX3-2P78367 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
NKX3-2P78367 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
NKX3-2P78367 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.14■■□□□ 1.45
NKX3-2P78367 AL138781.1-201ENST00000566567 1274 ntBASIC24.14■■□□□ 1.45
NKX3-2P78367 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
NKX3-2P78367 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
NKX3-2P78367 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24.14■■□□□ 1.45
NKX3-2P78367 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
NKX3-2P78367 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
NKX3-2P78367 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.14■■□□□ 1.45
NKX3-2P78367 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
NKX3-2P78367 ABCB10P4-201ENST00000566803 2184 ntBASIC24.13■■□□□ 1.45
NKX3-2P78367 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC24.13■■□□□ 1.45
NKX3-2P78367 SLC7A5P1-201ENST00000568957 537 ntBASIC24.13■■□□□ 1.45
NKX3-2P78367 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.13■■□□□ 1.45
NKX3-2P78367 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.12■■□□□ 1.45
NKX3-2P78367 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
NKX3-2P78367 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
NKX3-2P78367 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.12■■□□□ 1.45
NKX3-2P78367 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 AC069152.1-201ENST00000438030 544 ntBASIC24.12■■□□□ 1.45
NKX3-2P78367 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.12■■□□□ 1.45
NKX3-2P78367 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.12■■□□□ 1.45
NKX3-2P78367 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.12■■□□□ 1.45
NKX3-2P78367 DUSP8P5-201ENST00000422884 1815 ntBASIC24.12■■□□□ 1.45
NKX3-2P78367 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NKX3-2P78367 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms