Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.08■□□□□ 0.8
RNF4P78317 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF4P78317 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF4P78317 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF4P78317 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
RNF4P78317 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF4P78317 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RNF4P78317 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
RNF4P78317 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RNF4P78317 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF4P78317 BX005040.4-201ENST00000637145 1518 ntBASIC20.07■□□□□ 0.8
RNF4P78317 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF4P78317 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RNF4P78317 AC123595.1-201ENST00000440769 1046 ntBASIC20.06■□□□□ 0.8
RNF4P78317 LINC00526-201ENST00000581067 1875 ntBASIC20.06■□□□□ 0.8
RNF4P78317 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF4P78317 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF4P78317 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF4P78317 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RNF4P78317 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF4P78317 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF4P78317 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RNF4P78317 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.05■□□□□ 0.8
RNF4P78317 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF4P78317 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.05■□□□□ 0.8
RNF4P78317 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF4P78317 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF4P78317 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF4P78317 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 OR7E47P-201ENST00000546390 1422 ntBASIC20.04■□□□□ 0.8
RNF4P78317 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF4P78317 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.04■□□□□ 0.8
RNF4P78317 AC087623.3-201ENST00000607047 1098 ntBASIC20.04■□□□□ 0.8
RNF4P78317 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF4P78317 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.04■□□□□ 0.8
RNF4P78317 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
RNF4P78317 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF4P78317 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF4P78317 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.03■□□□□ 0.8
RNF4P78317 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.03■□□□□ 0.8
RNF4P78317 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.03■□□□□ 0.8
RNF4P78317 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.03■□□□□ 0.8
RNF4P78317 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.03■□□□□ 0.8
RNF4P78317 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.03■□□□□ 0.8
RNF4P78317 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.03■□□□□ 0.8
RNF4P78317 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
RNF4P78317 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RNF4P78317 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF4P78317 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.03■□□□□ 0.8
RNF4P78317 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.02■□□□□ 0.8
RNF4P78317 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
RNF4P78317 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
RNF4P78317 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.02■□□□□ 0.8
RNF4P78317 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.02■□□□□ 0.8
RNF4P78317 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
RNF4P78317 LINC02228-203ENST00000641970 1355 ntBASIC20.02■□□□□ 0.8
RNF4P78317 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 AC127496.7-201ENST00000625110 1798 ntBASIC20.02■□□□□ 0.8
RNF4P78317 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 AC139530.1-201ENST00000575312 1977 ntBASIC20.02■□□□□ 0.8
RNF4P78317 AC068473.5-201ENST00000616428 2072 ntBASIC20.02■□□□□ 0.8
RNF4P78317 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RNF4P78317 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.02■□□□□ 0.79
RNF4P78317 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RNF4P78317 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms