Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.17■■□□□ 1.3
VCPP55072 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.17■■□□□ 1.3
VCPP55072 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23.17■■□□□ 1.3
VCPP55072 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.17■■□□□ 1.3
VCPP55072 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
VCPP55072 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
VCPP55072 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCPP55072 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.17■■□□□ 1.3
VCPP55072 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VCPP55072 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.16■■□□□ 1.3
VCPP55072 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.16■■□□□ 1.3
VCPP55072 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.16■■□□□ 1.3
VCPP55072 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.16■■□□□ 1.3
VCPP55072 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.16■■□□□ 1.3
VCPP55072 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.16■■□□□ 1.3
VCPP55072 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
VCPP55072 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.16■■□□□ 1.3
VCPP55072 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.16■■□□□ 1.3
VCPP55072 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.16■■□□□ 1.3
VCPP55072 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
VCPP55072 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VCPP55072 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.15■■□□□ 1.3
VCPP55072 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.15■■□□□ 1.3
VCPP55072 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.15■■□□□ 1.3
VCPP55072 AC006015.1-201ENST00000429970 570 ntBASIC23.15■■□□□ 1.3
VCPP55072 IGHV3-19-201ENST00000521488 291 ntBASIC23.15■■□□□ 1.3
VCPP55072 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.15■■□□□ 1.3
VCPP55072 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.15■■□□□ 1.3
VCPP55072 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.15■■□□□ 1.3
VCPP55072 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.15■■□□□ 1.3
VCPP55072 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VCPP55072 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VCPP55072 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.15■■□□□ 1.3
VCPP55072 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
VCPP55072 LINC02228-203ENST00000641970 1355 ntBASIC23.14■■□□□ 1.3
VCPP55072 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
VCPP55072 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
VCPP55072 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.14■■□□□ 1.29
VCPP55072 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
VCPP55072 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
VCPP55072 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.14■■□□□ 1.29
VCPP55072 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.14■■□□□ 1.29
VCPP55072 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
VCPP55072 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
VCPP55072 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.13■■□□□ 1.29
VCPP55072 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
VCPP55072 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
VCPP55072 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.13■■□□□ 1.29
VCPP55072 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.13■■□□□ 1.29
VCPP55072 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
VCPP55072 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCPP55072 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.13■■□□□ 1.29
VCPP55072 GUSBP5-202ENST00000510805 1989 ntBASIC23.12■■□□□ 1.29
VCPP55072 EP400NL-214ENST00000641289 2402 ntBASIC23.12■■□□□ 1.29
VCPP55072 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCPP55072 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCPP55072 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCPP55072 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCPP55072 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
VCPP55072 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.12■■□□□ 1.29
VCPP55072 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
VCPP55072 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
VCPP55072 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.12■■□□□ 1.29
VCPP55072 AL109923.1-201ENST00000618799 583 ntBASIC23.12■■□□□ 1.29
VCPP55072 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.12■■□□□ 1.29
VCPP55072 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
VCPP55072 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC23.12■■□□□ 1.29
VCPP55072 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCPP55072 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCPP55072 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCPP55072 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.11■■□□□ 1.29
VCPP55072 AC026185.1-201ENST00000445748 174 ntBASIC23.11■■□□□ 1.29
VCPP55072 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
VCPP55072 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
VCPP55072 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCPP55072 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCPP55072 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
VCPP55072 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 AL353803.4-201ENST00000565882 1934 ntBASIC23.1■■□□□ 1.29
VCPP55072 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.1■■□□□ 1.29
VCPP55072 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.1■■□□□ 1.29
VCPP55072 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
VCPP55072 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VCPP55072 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.09■■□□□ 1.29
VCPP55072 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms