Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.27■□□□□ 0.84
RFX3P48380 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
RFX3P48380 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.27■□□□□ 0.84
RFX3P48380 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX3P48380 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX3P48380 AC024257.2-201ENST00000549699 147 ntBASIC20.27■□□□□ 0.84
RFX3P48380 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 AC010525.1-201ENST00000585559 441 ntBASIC20.27■□□□□ 0.84
RFX3P48380 AC011298.3-201ENST00000615796 283 ntBASIC20.27■□□□□ 0.84
RFX3P48380 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX3P48380 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RFX3P48380 EP400NL-214ENST00000641289 2402 ntBASIC20.27■□□□□ 0.84
RFX3P48380 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
RFX3P48380 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RFX3P48380 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RFX3P48380 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RFX3P48380 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RFX3P48380 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX3P48380 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
RFX3P48380 AC136469.2-201ENST00000623944 1028 ntBASIC20.26■□□□□ 0.83
RFX3P48380 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RFX3P48380 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX3P48380 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RFX3P48380 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX3P48380 AC135279.3-201ENST00000610945 1311 ntBASIC20.26■□□□□ 0.83
RFX3P48380 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFX3P48380 AC080038.3-201ENST00000623346 1952 ntBASIC20.25■□□□□ 0.83
RFX3P48380 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX3P48380 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RFX3P48380 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX3P48380 PBX2P1-201ENST00000493219 1291 ntBASIC20.25■□□□□ 0.83
RFX3P48380 MIR4767-201ENST00000582827 78 ntBASIC20.25■□□□□ 0.83
RFX3P48380 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX3P48380 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RFX3P48380 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX3P48380 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX3P48380 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.24■□□□□ 0.83
RFX3P48380 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFX3P48380 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.24■□□□□ 0.83
RFX3P48380 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX3P48380 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 LINC00565-201ENST00000562710 2331 ntBASIC20.24■□□□□ 0.83
RFX3P48380 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX3P48380 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX3P48380 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.23■□□□□ 0.83
RFX3P48380 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
RFX3P48380 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX3P48380 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX3P48380 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX3P48380 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.23■□□□□ 0.83
RFX3P48380 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.22■□□□□ 0.83
RFX3P48380 SLC47A1P1-202ENST00000449666 945 ntBASIC20.22■□□□□ 0.83
RFX3P48380 OR2I1P-207ENST00000453522 948 ntBASIC20.22■□□□□ 0.83
RFX3P48380 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.22■□□□□ 0.83
RFX3P48380 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.22■□□□□ 0.83
RFX3P48380 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFX3P48380 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms