Protein–RNA interactions for Protein: P42843

SKP2, F-box protein SKP2, yeast

Predictions only

Length 763 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SKP2	P42843	tQ(UUG)D2	tQ(UUG)D2	72 nt		4.39	□□□□□ -1.71
SKP2	P42843	tQ(UUG)D3	tQ(UUG)D3	72 nt		4.39	□□□□□ -1.71
SKP2	P42843	tQ(UUG)E1	tQ(UUG)E1	72 nt		4.39	□□□□□ -1.71
SKP2	P42843	tQ(UUG)H	tQ(UUG)H	72 nt		4.39	□□□□□ -1.71
SKP2	P42843	tQ(UUG)L	tQ(UUG)L	72 nt		4.39	□□□□□ -1.71
SKP2	P42843	ECM34	YHL043W	513 nt		4.39	□□□□□ -1.71
SKP2	P42843	VPS25	YJR102C	609 nt		4.39	□□□□□ -1.71
SKP2	P42843	YKL162C-A	YKL162C-A	153 nt		4.39	□□□□□ -1.71
SKP2	P42843	BOS1	YLR078C	735 nt		4.39	□□□□□ -1.71
SKP2	P42843	SWC7	YLR385C	399 nt		4.39	□□□□□ -1.71
SKP2	P42843	UFE1	YOR075W	1041 nt		4.39	□□□□□ -1.71
SKP2	P42843	LAS1	YKR063C	1509 nt		4.39	□□□□□ -1.71
SKP2	P42843	KTR6	YPL053C	1341 nt		4.39	□□□□□ -1.71
SKP2	P42843	ARO80	YDR421W	2853 nt		4.39	□□□□□ -1.71
SKP2	P42843	YFL040W	YFL040W	1623 nt		4.39	□□□□□ -1.71
SKP2	P42843	YCR007C	YCR007C	720 nt		4.38	□□□□□ -1.71
SKP2	P42843	SLX8	YER116C	825 nt		4.38	□□□□□ -1.71
SKP2	P42843	PCL7	YIL050W	858 nt		4.38	□□□□□ -1.71
SKP2	P42843	INA17	YPL099C	549 nt		4.38	□□□□□ -1.71
SKP2	P42843	ATG5	YPL149W	885 nt		4.38	□□□□□ -1.71
SKP2	P42843	YPR074W-A	YPR074W-A	171 nt		4.38	□□□□□ -1.71
SKP2	P42843	ART10	YLR392C	1557 nt		4.38	□□□□□ -1.71
SKP2	P42843	AGA1	YNR044W	2178 nt		4.38	□□□□□ -1.71
SKP2	P42843	UBP10	YNL186W	2379 nt		4.38	□□□□□ -1.71
SKP2	P42843	SPB4	YFL002C	1821 nt		4.37	□□□□□ -1.71
SKP2	P42843	MDR1	YGR100W	2853 nt		4.37	□□□□□ -1.71
SKP2	P42843	BCK2	YER167W	2556 nt		4.37	□□□□□ -1.71
SKP2	P42843	YNR065C	YNR065C	3351 nt		4.37	□□□□□ -1.71
SKP2	P42843	KAP114	YGL241W	3015 nt		4.37	□□□□□ -1.71
SKP2	P42843	ERG20	YJL167W	1059 nt		4.37	□□□□□ -1.71
SKP2	P42843	RAD27	YKL113C	1149 nt		4.37	□□□□□ -1.71
SKP2	P42843	YKR070W	YKR070W	1059 nt		4.37	□□□□□ -1.71
SKP2	P42843	OXR1	YPL196W	822 nt		4.37	□□□□□ -1.71
SKP2	P42843	CCL1	YPR025C	1182 nt		4.37	□□□□□ -1.71
SKP2	P42843	APP1	YNL094W	1764 nt		4.37	□□□□□ -1.71
SKP2	P42843	ALE1	YOR175C	1860 nt		4.37	□□□□□ -1.71
SKP2	P42843	PER1	YCR044C	1074 nt		4.36	□□□□□ -1.71
SKP2	P42843	BSC1	YDL037C	987 nt		4.36	□□□□□ -1.71
SKP2	P42843	NBP2	YDR162C	711 nt		4.36	□□□□□ -1.71
SKP2	P42843	YGR111W	YGR111W	1203 nt		4.36	□□□□□ -1.71
SKP2	P42843	PRE9	YGR135W	777 nt		4.36	□□□□□ -1.71
SKP2	P42843	RFA3	YJL173C	369 nt		4.36	□□□□□ -1.71
SKP2	P42843	HMX1	YLR205C	954 nt		4.36	□□□□□ -1.71
SKP2	P42843	ASI2	YNL159C	870 nt		4.36	□□□□□ -1.71
SKP2	P42843	SUP45	YBR143C	1314 nt		4.36	□□□□□ -1.71
SKP2	P42843	TRE2	YOR256C	2430 nt		4.36	□□□□□ -1.71
SKP2	P42843	PAH1	YMR165C	2589 nt		4.36	□□□□□ -1.71
SKP2	P42843	PRP28	YDR243C	1767 nt		4.35	□□□□□ -1.71
SKP2	P42843	MAL12	YGR292W	1755 nt		4.35	□□□□□ -1.71
SKP2	P42843	MAL32	YBR299W	1755 nt		4.35	□□□□□ -1.71
SKP2	P42843	BUD13	YGL174W	801 nt		4.35	□□□□□ -1.71
SKP2	P42843	OAR1	YKL055C	837 nt		4.35	□□□□□ -1.71
SKP2	P42843	LIP2	YLR239C	987 nt		4.35	□□□□□ -1.71
SKP2	P42843	ATG34	YOL083W	1239 nt		4.35	□□□□□ -1.71
SKP2	P42843	TYE7	YOR344C	876 nt		4.35	□□□□□ -1.71
SKP2	P42843	OSH2	YDL019C	3852 nt		4.35	□□□□□ -1.71
SKP2	P42843	MEK1	YOR351C	1494 nt		4.35	□□□□□ -1.71
SKP2	P42843	YOS1	YER074W-A	258 nt		4.34	□□□□□ -1.71
SKP2	P42843	PRP18	YGR006W	756 nt		4.34	□□□□□ -1.71
SKP2	P42843	YHR054C	YHR054C	1065 nt		4.34	□□□□□ -1.71
SKP2	P42843	SMD3	YLR147C	306 nt		4.34	□□□□□ -1.71
SKP2	P42843	HTA2	YBL003C	399 nt		4.34	□□□□□ -1.71
SKP2	P42843	SPC2	YML055W	537 nt		4.34	□□□□□ -1.71
SKP2	P42843	IRC13	YOR235W	315 nt		4.34	□□□□□ -1.71
SKP2	P42843	SFG1	YOR315W	1041 nt		4.34	□□□□□ -1.71
SKP2	P42843	snR189	snR189	189 nt		4.34	□□□□□ -1.71
SKP2	P42843	YRB30	YGL164C	1323 nt		4.34	□□□□□ -1.71
SKP2	P42843	NUR1	YDL089W	1455 nt		4.34	□□□□□ -1.71
SKP2	P42843	THI20	YOL055C	1656 nt		4.34	□□□□□ -1.71
SKP2	P42843	URC2	YDR520C	2319 nt		4.34	□□□□□ -1.72
SKP2	P42843	RNA14	YMR061W	2034 nt		4.33	□□□□□ -1.72
SKP2	P42843	MIC60	YKR016W	1623 nt		4.33	□□□□□ -1.72
SKP2	P42843	RIM21	YNL294C	1602 nt		4.33	□□□□□ -1.72
SKP2	P42843	RAD55	YDR076W	1221 nt		4.33	□□□□□ -1.72
SKP2	P42843	MEI4	YER044C-A	1227 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)C	tK(CUU)C	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)D1	tK(CUU)D1	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)D2	tK(CUU)D2	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)E1	tK(CUU)E1	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)E2	tK(CUU)E2	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)F	tK(CUU)F	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)G1	tK(CUU)G1	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)G2	tK(CUU)G2	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)G3	tK(CUU)G3	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)I	tK(CUU)I	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)J	tK(CUU)J	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)K	tK(CUU)K	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)M	tK(CUU)M	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	tK(CUU)P	tK(CUU)P	73 nt		4.33	□□□□□ -1.72
SKP2	P42843	KXD1	YGL079W	657 nt		4.33	□□□□□ -1.72
SKP2	P42843	YML047W-A	YML047W-A	366 nt		4.33	□□□□□ -1.72
SKP2	P42843	IPP1	YBR011C	864 nt		4.33	□□□□□ -1.72
SKP2	P42843	IDI1	YPL117C	867 nt		4.33	□□□□□ -1.72
SKP2	P42843	OPY1	YBR129C	987 nt		4.33	□□□□□ -1.72
SKP2	P42843	SSH1	YBR283C	1473 nt		4.32	□□□□□ -1.72
SKP2	P42843	MEF1	YLR069C	2286 nt		4.32	□□□□□ -1.72
SKP2	P42843	DET1	YDR051C	1005 nt		4.32	□□□□□ -1.72
SKP2	P42843	YDR056C	YDR056C	618 nt		4.32	□□□□□ -1.72
SKP2	P42843	CBS2	YDR197W	1170 nt		4.32	□□□□□ -1.72
SKP2	P42843	ATP6	Q0085	780 nt		4.32	□□□□□ -1.72

Retrieved 100 of 7,029 protein–RNA pairs in 29.7 ms